Structural Classification of Proteins

Protein: 70S ribosome functional complex from Escherichia coli [TaxId: 562]

Lineage:

Root: scop
Class: Low resolution protein structures [58117]
Not a true class
Fold: Ribosome and ribosomal fragments [58118]
Superfamily: Ribosome and ribosomal fragments [58119]
uperfamily
Family: Ribosome complexes [58120]
Protein: 70S ribosome functional complex [58121]
Species: Escherichia coli [TaxId: 562] [58123]

PDB Entry Domains:

2qal
automatically matched to d1p6gh_
complexed with mg, nmy
1. region h:2-128 [150221]
2qan
automatically matched to d1p6gh_
complexed with mg, nmy
1. region h:2-128 [150275]
2qbf
automatically matched to d1p6gh_
complexed with mg
1. region h:2-128 [150495]
2qbd
automatically matched to d1p6gh_
complexed with mg
1. region h:2-128 [150441]
3df1
automatically matched to d1p6gh_
complexed with hyg, mg
1. region h:2-128 [157610]
3df3
automatically matched to d1p6gh_
complexed with hyg, mg
1. region h:2-128 [157664]
2qam
automatically matched to d1p851_
complexed with mg, nmy, zn
1. region 1:3-52 [150235]
2qam
automatically matched to d1p85n_
complexed with mg, nmy, zn
1. region p:1-114 [150256]
2qoy
automatically matched to d1p6gh_
complexed with mg, nmy, scm
1. region h:2-128 [151098]
2qp0
automatically matched to d1p6gh_
complexed with mg, nmy, scm
1. region h:2-128 [151151]
2qao
automatically matched to d1p851_
complexed with mg, nmy, zn
1. region 1:3-52 [150289]
2qao
automatically matched to d1p85n_
complexed with mg, nmy, zn
1. region p:1-114 [150309]
2qb9
automatically matched to d1p6gh_
complexed with lll, mg
1. region h:2-128 [150335]
2qbb
automatically matched to d1p6gh_
complexed with lll, mg
1. region h:2-128 [150388]
2qbe
automatically matched to d1p851_
complexed with mg, zn
1. region 1:3-52 [150455]
2qbg
automatically matched to d1p851_
complexed with mg, zn
1. region 1:3-52 [150509]
2qoz
automatically matched to d1p851_
complexed with mg, nmy, zn
1. region 1:3-52 [151112]
2qp1
automatically matched to d1p851_
complexed with mg, nmy, zn
1. region 1:3-52 [151165]
2qbe
automatically matched to d1p85n_
complexed with mg, zn
1. region p:1-114 [150476]
2qbg
automatically matched to d1p85n_
complexed with mg, zn
1. region p:1-114 [150530]
2qoz
automatically matched to d1p85n_
complexed with mg, nmy, zn
1. region p:1-114 [151132]
2qp1
automatically matched to d1p85n_
complexed with mg, nmy, zn
1. region p:1-114 [151185]
3df2
automatically matched to d1p851_
complexed with mg, zn
1. region 1:3-52 [157625]
3df4
automatically matched to d1p851_
complexed with mg, zn
1. region 1:3-52 [157679]
3df2
automatically matched to d1p85n_
complexed with mg, zn
1. region p:1-114 [157645]
3df4
automatically matched to d1p85n_
complexed with mg, zn
1. region p:1-114 [157699]
2qbh
automatically matched to d1p6gh_
complexed with lll, mg
1. region h:2-128 [150549]
2qbj
automatically matched to d1p6gh_
complexed with lll, mg
1. region h:2-128 [150603]
2qou
automatically matched to d1p6gh_
complexed with mg, scm
1. region h:2-128 [150992]
2qow
automatically matched to d1p6gh_
complexed with mg, scm
1. region h:2-128 [151045]
2qba
automatically matched to d1p851_
complexed with lll, mg, zn
1. region 1:3-52 [150349]
2qbc
automatically matched to d1p851_
complexed with lll, mg, zn
1. region 1:3-52 [150402]
2qba
automatically matched to d1p85n_
complexed with lll, mg, zn
1. region p:1-114 [150369]
2qbc
automatically matched to d1p85n_
complexed with lll, mg, zn
1. region p:1-114 [150422]
2z4m
automatically matched to d1p6gh_
complexed with mg, par
1. region h:2-128 [154113]
2vho
automatically matched to d1p6gh_
complexed with mg
1. region h:2-128 [153130]
2z4k
automatically matched to d1p6gh_
complexed with mg, par
1. region h:2-128 [154059]
2qbi
automatically matched to d1p851_
complexed with lll, mg, zn
1. region 1:3-52 [150563]
2qbk
automatically matched to d1p851_
complexed with lll, mg, zn
1. region 1:3-52 [150617]
2qov
automatically matched to d1p851_
complexed with mg, zn
1. region 1:3-52 [151006]
2qox
automatically matched to d1p851_
complexed with mg, zn
1. region 1:3-52 [151059]
2qbi
automatically matched to d1p85n_
complexed with lll, mg, zn
1. region p:1-114 [150584]
2qbk
automatically matched to d1p85n_
complexed with lll, mg, zn
1. region p:1-114 [150638]
2qov
automatically matched to d1p85n_
complexed with mg, zn
1. region p:1-114 [151026]
2qox
automatically matched to d1p85n_
complexed with mg, zn
1. region p:1-114 [151079]
2vhp
automatically matched to d1p6gh_
complexed with mg
1. region h:2-128 [153152]
2z4l
automatically matched to d1p851_
complexed with mg, par, zn
1. region 1:3-52 [154073]
2z4n
automatically matched to d1p851_
complexed with mg, par, zn
1. region 1:3-52 [154127]
2z4l
automatically matched to d1p85n_
complexed with mg, par, zn
1. region p:1-114 [154094]
2z4n
automatically matched to d1p85n_
complexed with mg, par, zn
1. region p:1-114 [154148]
2vhm
automatically matched to d1p851_
complexed with mg; mutant
1. region 1:3-52 [153059]
2vhn
automatically matched to d1p851_
complexed with mg
1. region 1:3-52 [153091]
2vhm
automatically matched to d1p85n_
complexed with mg; mutant
1. region p:1-114 [153079]
2vhn
automatically matched to d1p85n_
complexed with mg
1. region p:1-114 [153111]
1qzc
S12, sh44, lh69 and srl separately fitted into the cryo-EM map of EF-Tu ternary complex
1. chain l [96627]
1r2w
L11 with 58nts of 23s rRNA fitted into the cryo-em map of the 70S ribosome
1. chain a [96885]
1r2x
L11 with 58nts of 23s rRNA fitted into the cryo-em map of EF-Tu ternary complex
1. chain a [96887]
2rdo
automatically matched to d1p851_
1. region 1:3-52 [151935]
2rdo
automatically matched to d1p85n_
1. region p:1-114 [151956]
1qzd
EF-Tu/kirromycin model fitted into the cryo-EM map of EF-Tu ternary complex
1. chain a [96628]
1mj1
Fitting the ternary complex of EF-TU/tRNA/GTP in the cryo-EM map
1. chain a [79175]
2. chain o [79179]
3. chain p [79180]
4. chain l [79178]
1eg0
1. chain a [45807]
2. chain b [45808]
3. chain c [45809]
4. chain d [45810]
5. chain e [45811]
6. chain f [45812]
7. chain g [45813]
8. chain h [45814]
9. chain j [45816]
10. chain k [45817]
11. chain n [45820]
1p86
50S subunit fit in the cryo-EM map of 70S ribosome
1. chain a [87898]
2. chain b [87899]
3. chain c [87900]
4. chain d [87901]
5. chain e [87902]
6. chain f [87903]
7. chain g [87904]
8. chain h [87905]
9. chain i [87906]
10. chain j [87907]
11. chain k [87908]
12. chain l [87909]
13. chain m [87910]
14. chain n [87911]
15. chain o [87912]
16. chain q [87913]
17. chain r [87914]
18. chain s [87915]
19. chain t [87916]
20. chain u [87917]
21. chain w [87918]
22. chain x [87919]
23. chain z [87920]
24. chain 1 [87894]
25. chain 4 [87895]
1p87
30S subunit fit in the cryo-EM map of 70S ribosome
1. chain b [87922]
2. chain c [87923]
3. chain d [87924]
4. chain e [87925]
5. chain f [87926]
6. chain g [87927]
7. chain h [87928]
8. chain i [87929]
9. chain j [87930]
10. chain k [87931]
11. chain l [87932]
12. chain m [87933]
13. chain n [87934]
14. chain o [87935]
15. chain p [87936]
16. chain q [87937]
17. chain r [87938]
18. chain s [87939]
19. chain t [87940]
1pn6
domain-wise fitting of the crystal structure of T. thermophilus EF-G in the cryo-EM map of 70S ribosome
1. chain a [88161]
1pn7
S12, L11 proteins and p-tRNA aligned to the cryo-EM map
1. chain o [88164]
2. chain l [88163]
1pn8
S12, L11 proteins and E-site tRNA aligned to the cryo-EM map
1. chain o [88167]
2. chain l [88166]
1mi6
Docking of the modified RF2 x-ray structure
1. chain a [79149]
1p85
50S subunit fit in the cryo-EM map of 70S ribosome
1. chain a [87870]
2. chain b [87871]
3. chain c [87872]
4. chain d [87873]
5. chain e [87874]
6. chain f [87875]
7. chain g [87876]
8. chain h [87877]
9. chain i [87878]
10. chain j [87879]
11. chain k [87880]
12. chain l [87881]
13. chain m [87882]
14. chain n [87883]
15. chain o [87884]
16. chain q [87885]
17. chain r [87886]
18. chain s [87887]
19. chain t [87888]
20. chain u [87889]
21. chain w [87890]
22. chain x [87891]
23. chain z [87892]
24. chain 1 [87867]
25. chain 4 [87868]
1p6g
30S subunit fit in the cryo-EM map of 70S ribosome
1. chain c [87821]
2. chain d [87822]
3. chain e [87823]
4. chain f [87824]
5. chain g [87825]
6. chain h [87826]
7. chain i [87827]
8. chain j [87828]
9. chain k [87829]
10. chain l [87830]
11. chain m [87831]
12. chain n [87832]
13. chain o [87833]
14. chain p [87834]
15. chain q [87835]
16. chain r [87836]
17. chain s [87837]
18. chain t [87838]
1t1m
RRF-binding site
1. chain c [106256]
1ml5
also include low case chains a;b;c;d;e;f;g;h;l;m;n;o;p;q;r;s;t;u;v;w;x
termination complex with release factor 2
1. chain z [79280]
2. chain c [79259]
3. chain e [79260]
4. chain f [79261]
5. chain g [79262]
6. chain h [79263]
7. chain i [79264]
8. chain j [79265]
9. chain k [79266]
10. chain l [79267]
11. chain m [79268]
12. chain n [79269]
13. chain o [79270]
14. chain p [79271]
15. chain q [79272]
16. chain r [79273]
17. chain s [79274]
18. chain t [79275]
19. chain u [79276]
20. chain v [79277]
21. chain w [79278]
22. chain x [79279]
1ls2
Fitting of EF-TU and tRNA in the cryo-EM map
1. chain a [74238]
1pns
30S subunit; the coordinates of 50S subunit in 1pnu
1. chain b [88169]
2. chain c [88170]
3. chain d [88171]
4. chain e [88172]
5. chain f [88173]
6. chain g [88174]
7. chain h [88175]
8. chain i [88176]
9. chain j [88177]
10. chain k [88178]
11. chain l [88179]
12. chain m [88180]
13. chain n [88181]
14. chain o [88182]
15. chain p [88183]
16. chain q [88184]
17. chain r [88185]
18. chain s [88186]
19. chain t [88187]
1pnx
30S subunit; the coordinates of 50S subunit in 1pny
1. chain b [88225]
2. chain c [88226]
3. chain d [88227]
4. chain e [88228]
5. chain f [88229]
6. chain g [88230]
7. chain h [88231]
8. chain i [88232]
9. chain j [88233]
10. chain k [88234]
11. chain l [88235]
12. chain m [88236]
13. chain n [88237]
14. chain o [88238]
15. chain p [88239]
16. chain q [88240]
17. chain r [88241]
18. chain s [88242]
19. chain t [88243]
3bbx
automatically matched to d1p851_
complexed with mg
1. region 1:3-52 [155095]
3bbx
automatically matched to d1p85n_
complexed with mg
1. region p:1-114 [155113]
1pnu
50S subunit; the coordinates of 30S subunit in 1pns
1. chain 1 [88192]
2. chain 2 [88193]
3. chain 3 [88194]
4. chain 4 [88195]
5. chain 5 [88196]
6. chain a [88198]
7. chain b [88199]
8. chain c [88200]
9. chain d [88201]
10. chain e [88202]
11. chain f [88203]
12. chain g [88204]
13. chain h [88205]
14. chain i [88206]
15. chain j [88207]
16. chain k [88208]
17. chain l [88209]
18. chain m [88210]
19. chain n [88211]
20. chain o [88212]
21. chain p [88213]
22. chain q [88214]
23. chain r [88215]
24. chain s [88216]
25. chain t [88217]
26. chain u [88218]
27. chain v [88219]
28. chain w [88220]
29. chain x [88221]
30. chain y [88222]
31. chain z [88223]
1voq
30S subunit; the coordinates of 50S subunit in a different PDB entry
1. chain a [113683]
2. chain b [113684]
3. chain c [113685]
4. chain d [113686]
5. chain e [113687]
6. chain f [113688]
7. chain g [113689]
8. chain h [113690]
9. chain i [113691]
10. chain j [113692]
11. chain k [113693]
12. chain l [113694]
13. chain m [113695]
14. chain n [113696]
15. chain o [113697]
16. chain p [113698]
17. chain q [113699]
18. chain r [113700]
19. chain s [113701]
20. chain t [113702]
1vos
30S subunit; the coordinates of 50S subunit in a different PDB entry
1. chain a [113733]
2. chain b [113734]
3. chain c [113735]
4. chain d [113736]
5. chain e [113737]
6. chain f [113738]
7. chain g [113739]
8. chain h [113740]
9. chain i [113741]
10. chain j [113742]
11. chain k [113743]
12. chain l [113744]
13. chain m [113745]
14. chain n [113746]
15. chain o [113747]
16. chain p [113748]
17. chain q [113749]
18. chain r [113750]
19. chain s [113751]
20. chain t [113752]
1vov
30S subunit; the coordinates of 50S subunit in a different PDB entry
1. chain a [113783]
2. chain b [113784]
3. chain c [113785]
4. chain d [113786]
5. chain e [113787]
6. chain f [113788]
7. chain g [113789]
8. chain h [113790]
9. chain i [113791]
10. chain j [113792]
11. chain k [113793]
12. chain l [113794]
13. chain m [113795]
14. chain n [113796]
15. chain o [113797]
16. chain p [113798]
17. chain q [113799]
18. chain r [113800]
19. chain s [113801]
20. chain t [113802]
1vox
30S subunit; the coordinates of 50S subunit in a different PDB entry
1. chain a [113833]
2. chain b [113834]
3. chain c [113835]
4. chain d [113836]
5. chain e [113837]
6. chain f [113838]
7. chain g [113839]
8. chain h [113840]
9. chain i [113841]
10. chain j [113842]
11. chain k [113843]
12. chain l [113844]
13. chain m [113845]
14. chain n [113846]
15. chain o [113847]
16. chain p [113848]
17. chain q [113849]
18. chain r [113850]
19. chain s [113851]
20. chain t [113852]
1voz
30S subunit; the coordinates of 50S subunit in a different PDB entry
1. chain a [113883]
2. chain b [113884]
3. chain c [113885]
4. chain d [113886]
5. chain e [113887]
6. chain f [113888]
7. chain g [113889]
8. chain h [113890]
9. chain i [113891]
10. chain j [113892]
11. chain k [113893]
12. chain l [113894]
13. chain m [113895]
14. chain n [113896]
15. chain o [113897]
16. chain p [113898]
17. chain q [113899]
18. chain r [113900]
19. chain s [113901]
20. chain t [113902]
1pny
50S subunit; the coordinates of 30S subunit in 1pnx
1. chain 1 [88245]
2. chain 2 [88246]
3. chain 3 [88247]
4. chain 4 [88248]
5. chain 5 [88249]
6. chain a [88251]
7. chain b [88252]
8. chain c [88253]
9. chain d [88254]
10. chain e [88255]
11. chain f [88256]
12. chain g [88257]
13. chain h [88258]
14. chain i [88259]
15. chain j [88260]
16. chain k [88261]
17. chain l [88262]
18. chain m [88263]
19. chain n [88264]
20. chain o [88265]
21. chain p [88266]
22. chain q [88267]
23. chain r [88268]
24. chain s [88269]
25. chain t [88270]
26. chain u [88271]
27. chain v [88272]
28. chain w [88273]
29. chain x [88274]
30. chain y [88275]
31. chain z [88276]
1jqm
Fitting of L11 protein and elongation factor G (EF-G) in the cryo-EM map
1. chain a [63235]
2. chain b [63236]
1jqs
Fitting of L11 and EF-G domains G' and V in the cryo-EM map
1. chain a [63237]
2. chain b [63238]
3. chain c [63239]
1jqt
Fitting of L11 in the cryo-EM map
1. chain a [63240]
1vor
50S subunit; the coordinates of 30S subunit in a different PDB entry
1. chain 1 [113703]
2. chain 2 [113704]
3. chain 3 [113705]
4. chain 4 [113706]
5. chain 5 [113707]
6. chain 6 [113708]
7. chain 7 [113709]
8. chain d [113710]
9. chain e [113711]