Structural Classification of Proteins

Family: Ribonuclease PH domain 2-like

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ribonuclease PH domain 2-like [55665]
beta(2)-alpha-beta(2)-alpha; 3 layers: alpha/beta/alpha; antiparallel sheet: order 2134
Superfamily: Ribonuclease PH domain 2-like [55666]
uperfamily
Family: Ribonuclease PH domain 2-like [55667]

Protein Domains:

Ribonuclease PH, domain 2 [103150]
1. Aquifex aeolicus [TaxId: 63363] [103151] (4)
  1. 1uds
    complexed with po4, so4; mutant
    1. region a:151-255 [99220]
  2. 1udq
    complexed with po4, so4; mutant
    1. region a:151-255 [99218]
  3. 1udo
    complexed with po4, so4; mutant
    1. region a:151-255 [99216]
  4. 1udn
    complexed with po4, so4
    1. region a:151-255 [99214]
2. Pseudomonas aeruginosa [TaxId: 287] [103152] (2)
  1. 1r6l
    complexed with nhe, so4
    1. region a:152-239 [97154]
  2. 1r6m
    complexed with po4
    1. region a:152-239 [97156]
3. Bacillus subtilis [TaxId: 1423] [103153] (3)
  1. 1oys
    mutant
    1. region a:152-237 [93759]
  2. 1oyp
    complexed with sul
    1. region a:152-243 [93735]
    2. region b:152-243 [93737]
    3. region c:152-243 [93739]
    4. region d:152-243 [93741]
    5. region e:152-243 [93743]
    6. region f:152-243 [93745]
  3. 1oyr
    complexed with cd, sul
    1. region a:152-242 [93747]
    2. region b:152-242 [93749]
    3. region c:152-242 [93751]
    4. region d:152-242 [93753]
    5. region e:152-242 [93755]
    6. region f:152-242 [93757]
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 [55668]
duplication of two-domain units formed by domains 1-2 and 4-5
1. Streptomyces antibioticus [TaxId: 1890] [55669] (2)
  1. 1e3h
    complexed with so4
    1. region a:152-262 [40695]
    2. region a:483-578 [40696]
  2. 1e3p
    complexed with so4, wo4
    1. region a:152-262 [40697]
    2. region a:483-578 [40698]
Exosome complex exonuclease RRP45 [160586]
1. Human (Homo sapiens) [TaxId: 9606] [160587] (1)
  SQ Q86Y41 185-302
  1. 2nn6
    mutant
    1. region a:185-302 [148296]
Exosome complex exonuclease RRP42 [160588]
1. Human (Homo sapiens) [TaxId: 9606] [160589] (1)
  SQ Q15024 192-285
  1. 2nn6
    mutant
    1. region e:192-285 [148304]
Exosome complex exonuclease 1, ECX1 [160590]
1. Sulfolobus solfataricus [TaxId: 2287] [160591] (50)
  SQ Q9UXC2 156-241! SQ Q9UXC2 156-248
  1. 2je6
    complexed with 1pe, cl, peg; mutant
    1. region b:156-241 [147994]
  2. 2jea
    automatically matched to 2JE6 B:156-241
    complexed with 1pe; mutant
    1. region b:156-241 [148011]
  3. 2jeb
    automatically matched to 2JE6 B:156-241
    complexed with 1pe, cl, mn; mutant
    1. region b:156-241 [148018]
  4. 2br2
    complexed with cl
    1. region b:156-248 [146168]
  5. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region d:156-248 [146172]
  6. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region f:156-248 [146176]
  7. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region h:156-248 [146180]
  8. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region j:156-248 [146184]
  9. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region l:156-248 [146188]
  10. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region n:156-248 [146192]
  11. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region p:156-248 [146196]
  12. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region r:156-248 [146200]
  13. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region t:156-248 [146204]
  14. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region v:156-248 [146208]
  15. 2br2
    automatically matched to 2BR2 B:156-248
    complexed with cl
    1. region x:156-248 [146212]
  16. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region b:156-248 [146231]
  17. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region d:156-248 [146235]
  18. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region f:156-248 [146239]
  19. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region h:156-248 [146243]
  20. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region j:156-248 [146247]
  21. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region l:156-248 [146251]
  22. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region n:156-248 [146255]
  23. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region p:156-248 [146259]
  24. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region r:156-248 [146263]
  25. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region t:156-248 [146267]
  26. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region v:156-248 [146271]
  27. 2c37
    automatically matched to 2BR2 B:156-248
    complexed with cl, na, rp5, u5p
    1. region x:156-248 [146275]
  28. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region b:156-248 [146279]
  29. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region d:156-248 [146283]
  30. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region f:156-248 [146287]
  31. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region h:156-248 [146291]
  32. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region j:156-248 [146295]
  33. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region l:156-248 [146299]
  34. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region n:156-248 [146303]
  35. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region p:156-248 [146307]
  36. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region r:156-248 [146311]
  37. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region t:156-248 [146315]
  38. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region v:156-247 [146319]
  39. 2c38
    automatically matched to 2BR2 B:156-248
    complexed with amp, cl
    1. region x:156-248 [146323]
  40. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region b:156-248 [146327]
  41. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region d:156-248 [146331]
  42. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region f:156-248 [146335]
  43. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region j:156-248 [146341]
  44. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region l:156-248 [146345]
  45. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region n:156-248 [146349]
  46. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region p:156-248 [146353]
  47. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region r:156-248 [146357]
  48. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region t:156-248 [146361]
  49. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region v:156-247 [146365]
  50. 2c39
    automatically matched to 2BR2 B:156-248
    complexed with adp
    1. region x:156-248 [146369]
2. Archaeoglobus fulgidus [TaxId: 2234] [160592] (6)
  SQ O29757 154-252
  1. 2ba0
    1. region d:154-252 [146106]
  2. 2ba0
    automatically matched to 2BA0 D:154-252
    1. region e:154-252 [146108]
  3. 2ba0
    automatically matched to 2BA0 D:154-252
    1. region f:154-252 [146110]
  4. 2ba1
    automatically matched to 2BA0 D:154-252
    complexed with zn
    1. region d:154-252 [146118]
  5. 2ba1
    automatically matched to 2BA0 D:154-252
    complexed with zn
    1. region e:154-252 [146120]
  6. 2ba1
    automatically matched to 2BA0 D:154-252
    complexed with zn
    1. region f:154-252 [146122]
Exosome complex exonuclease RRP41 [160593]
1. Human (Homo sapiens) [TaxId: 9606] [160594] (1)
  SQ Q9NPD3 152-241
  1. 2nn6
    mutant
    1. region b:151-240 [148298]
Exosome complex exonuclease RRP46 [160595]
1. Human (Homo sapiens) [TaxId: 9606] [160596] (1)
  SQ Q9NQT4 147-235
  1. 2nn6
    mutant
    1. region d:147-235 [148302]
Exosome complex exonuclease 2, ECX2 [160597]
1. Archaeoglobus fulgidus [TaxId: 2234] [160598] (6)
  SQ O29756 179-257
  1. 2ba0
    1. region g:179-257 [146112]
  2. 2ba0
    automatically matched to 2BA0 G:179-257
    1. region h:179-257 [146114]
  3. 2ba0
    automatically matched to 2BA0 G:179-257
    1. region i:179-257 [146116]
  4. 2ba1
    automatically matched to 2BA0 G:179-257
    complexed with zn
    1. region g:179-257 [146124]
  5. 2ba1
    automatically matched to 2BA0 G:179-257
    complexed with zn
    1. region h:179-257 [146126]
  6. 2ba1
    automatically matched to 2BA0 G:179-257
    complexed with zn
    1. region i:179-257 [146128]
2. Sulfolobus solfataricus [TaxId: 2287] [160599] (51)
  SQ Q9UXC0 192-275
  1. 2je6
    complexed with 1pe, cl, peg; mutant
    1. region a:192-275 [147992]
  2. 2jea
    automatically matched to 2JE6 A:192-275
    complexed with 1pe; mutant
    1. region a:192-275 [148009]
  3. 2jeb
    automatically matched to 2JE6 A:192-275
    complexed with 1pe, cl, mn; mutant
    1. region a:192-275 [148016]
  4. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region a:192-275 [146166]
  5. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region c:192-275 [146170]
  6. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region e:192-275 [146174]
  7. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region g:192-275 [146178]
  8. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region i:192-275 [146182]
  9. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region k:192-275 [146186]
  10. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region m:192-275 [146190]
  11. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region o:192-275 [146194]
  12. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region q:192-275 [146198]
  13. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region s:192-275 [146202]
  14. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region u:192-275 [146206]
  15. 2br2
    automatically matched to 2JE6 A:192-275
    complexed with cl
    1. region w:192-275 [146210]
  16. 2c37
    automatically matched to 2JE6 A:192-275
    complexed with cl, na, rp5, u5p
    1. region a:192-275 [146229]
  17. 2c37
    automatically matched to 2JE6 A:192-275
    complexed with cl, na, rp5, u5p
    1. region c:192-275 [146233]
  18. 2c37
    automatically matched to 2JE6 A:192-275
    complexed with cl, na, rp5, u5p
    1. region e:192-275 [146237]
  19. 2c37
    automatically matched to 2JE6 A:192-275
    complexed with cl, na, rp5, u5p
    1. region g:192-275 [146241]
  20. 2c37
    automatically matched to 2JE6 A:192-275
    complexed with cl, na, rp5, u5p
    1. region i:192-275 [146245]
  21. 2c37
    automatically matched to 2JE6 A:192-275
    complexed with cl, na, rp5, u5p
    1. region k:192-275 [146249]
  22. 2c37