Structural Classification of Proteins

Superfamily: Immunoglobulin

: uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Immunoglobulin-like beta-sandwich [48725]
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily: Immunoglobulin [48726]
uperfamily

Families:

V set domains (antibody variable domain-like) [48727] (90)
1. Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
  VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  1. Human (Homo sapiens), cluster 1 [TaxId: 9606] [88520] (18)
    1. 1bww
      VL dimer of Bence-Jones protein REI
      mutant
      1. chain a [20518]
      2. chain b [20519]
    2. 1rz7
      part of anti HIV-1 gp120-reactive Fab 48D
      complexed with gol
      1. region l:2-107 [98135]
    3. 1rzg
      part of anti HIV-1 gp120-reactive Fab 412D
      complexed with suc
      1. region b:1-107 [98156]
      2. region d:1-107 [98160]
    4. 1b0w
      VL dimer of Bence-Jones protein BRE
      1. chain a [20532]
      2. chain b [20533]
      3. chain c [20534]
    5. 1wtl
      VL dimer of Bence-Jones protein WAT
      1. chain a [20530]
      2. chain b [20531]
    6. 1vge
      part of humanized Fab TR1.9
      1. region l:1-107 [20094]
    7. 1qp1
      VL dimer of Bence-Jones protein BRE
      1. chain a [20535]
      2. chain b [20536]
      3. chain c [20537]
    8. 1dql
      part of IgM Fv MEZ
      1. chain l [19828]
    9. 1bre
      VL dimer of Bence-Jones protein BRE
      1. chain a [20538]
      2. chain b [20539]
      3. chain c [20540]
      4. chain d [20541]
      5. chain e [20542]
      6. chain f [20543]
    10. 1rei
      VL dimer of Bence-Jones protein REI
      1. chain a [20520]
      2. chain b [20521]
    11. 1f6l
      VL of anti-ferritin antibody
      1. chain l [76159]
    12. 1dee
      part of IgM RF 2A2
      1. region a:1-107 [20442]
      2. region c:1001-1107 [20444]
      3. region e:2001-2107 [20446]
    13. 1igm
      part of IgM Fv POT
      1. chain l [19826]
    14. 1hez
      part of IgM RF 2A2
      complexed with imd
      1. region a:1-107 [60983]
      2. region c:1-107 [60987]
    15. 1b6d
      part of Bence-Jones protein DEL
      1. region a:1-107 [20603]
      2. region b:1-107 [20604]
    16. 1dfb
      part of Fab 3D6
      1. region l:1-106 [19810]
    17. 1rzi
      part of anti HIV-1 gp120-reactive Fab 47E
      1. region a:2-107 [98166]
      2. region c:1-107 [98170]
      3. region e:2-107 [98174]
      4. region g:2-107 [98178]
      5. region i:2-107 [98182]
      6. region k:2-107 [98186]
      7. region m:2-107 [98190]
      8. region o:2-107 [98194]
    18. 1ar2
      VL of Bence-Jones protein REI; disulfide-free mutant
      1. chain a [20522]
  2. Human (Homo sapiens), cluster 2 [TaxId: 9606] [88521] (10)
    1. 1eeq
      VL dimer of Bence-Jones protein LEN
      mutant
      1. chain a [20544]
      2. chain b [20545]
    2. 1eeu
      VL dimer of Bence-Jones protein LEN
      complexed with ipa; mutant
      1. chain a [20546]
      2. chain b [20547]
    3. 1qac
      VL dimer of Bence-Jones protein LEN
      1. chain a [20549]
      2. chain b [20550]
    4. 1efq
      VL dimer of Bence-Jones protein LEN
      complexed with ium, zn; mutant
      1. chain a [20548]
    5. 1ek3
      VL dimer of Bence-Jones protein REC
      complexed with ca, cl
      1. chain a [59434]
      2. chain b [59435]
    6. 5lve
      VL dimer of Bence-Jones protein LEN
      1. chain a [20551]
    7. 3lve
      VL dimer of Bence-Jones protein LEN
      complexed with zn; mutant
      1. chain a [20552]
    8. 1lve
      VL dimer of Bence-Jones protein LEN
      1. chain a [20553]
    9. 4lve
      VL dimer of Bence-Jones protein LEN
      mutant
      1. chain a [20554]
      2. chain b [20555]
    10. 2lve
      VL dimer of Bence-Jones protein LEN
      1. chain a [20556]
  3. Human (Homo sapiens), cluster 3.1 [TaxId: 9606] [88522] (10)
    1. 1n0x
      part of an anti HIV-1 Fab
      complexed with cxs, gol, k, orn, so4
      1. region l:1-107 [91532]
      2. region m:1-107 [91534]
    2. 2brr
      automatically matched to d1hzhl1
      complexed with acy, nh2, so4
      1. region l:1-107 [129011]
    3. 2brr
      automatically matched to d1hzhl1
      complexed with acy, nh2, so4
      1. region x:2-107 [129013]
    4. 1iqd
      part of Fab BO2C11 against the C2 domain of factor VIII
      mutant
      1. region a:2-108 [62644]
    5. 2ny7
      automatically matched to d1hzhl1
      complexed with nag; mutant
      1. region l:1-107 [138802]
    6. 1dn0
      part of Fab Kau cold agglutinin IgM
      1. region a:1-107 [19830]
      2. region c:1-107 [19832]
    7. 2ghw
      complexed with cl
      1. region b:132-240 [145198]
    8. 2ghw
      automatically matched to 2GHW B:132-240
      complexed with cl
      1. region d:132-240 [145200]
    9. 1hzh
      part of intact IgG B12 antibody
      complexed with fuc, gal, man, nag
      1. region l:1-107 [61445]
      2. region m:1-107 [61447]
    10. 1qlr
      part of Fab Kau cold agglutinin IgM
      complexed with fuc, nag
      1. region a:1-107 [19834]
      2. region c:1-107 [19836]
  4. Human (Homo sapiens), cluster 3.2 [TaxId: 9606] [88523] (68)
    1. 2fx7
      automatically matched to d1rhha1
      complexed with gol; mutant
      1. region l:1-107 [134278]
    2. 2nxy
      automatically matched to d1g9ml1
      complexed with hez, nag, trs; mutant
      1. region c:2001-2109 [138747]
    3. 2ny2
      automatically matched to d1g9ml1
      complexed with edo, hez, nag, suc; mutant
      1. region c:2001-2109 [138772]
    4. 2ny3
      automatically matched to d1g9ml1
      complexed with nag, suc; mutant
      1. region c:2001-2109 [138778]
    5. 2ny4
      automatically matched to d1g9ml1
      complexed with hez, nag, suc; mutant
      1. region c:2001-2109 [138784]
    6. 1rhh
      part of HIV-1 neutralizing Fab x5
      1. region a:1-106a [97473]
      2. region c:1-106a [97477]
    7. 2ny1
      automatically matched to d1g9ml1
      complexed with nag, suc; mutant
      1. region c:2001-2109 [138766]
    8. 2nxz
      automatically matched to d1g9ml1
      complexed with edo, hez, ipa, nag, suc; mutant
      1. region c:2001-2109 [138753]
    9. 2fx9
      automatically matched to d1rhha1
      complexed with orq
      1. region l:1-107 [134300]
    10. 2fx9
      automatically matched to d1rhha1
      complexed with orq
      1. region m:1-107 [134302]
    11. 1tzg
      automatically matched to d1rhha1
      complexed with gol
      1. region l:1-107 [119400]
    12. 1tzg
      automatically matched to d1rhha1
      complexed with gol
      1. region m:1-107 [119402]
    13. 2ny0
      automatically matched to d1g9ml1
      complexed with hez, nag; mutant
      1. region c:2001-2109 [138760]
    14. 2fx8
      automatically matched to d1rhha1
      mutant
      1. region l:1-107 [134288]
    15. 2fx8
      automatically matched to d1rhha1
      mutant
      1. region m:1-107 [134290]
    16. 2fx8
      automatically matched to d1rhha1
      mutant
      1. region n:1-107 [134292]
    17. 2fx8
      automatically matched to d1rhha1
      mutant
      1. region o:1-107 [134294]
    18. 1yym
      automatically matched to d1g9ml1
      complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
      1. region l:1-107 [124235]
    19. 1yym
      automatically matched to d1g9ml1
      complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
      1. region q:1001-1107 [124238]
    20. 2i5y
      automatically matched to d1g9ml1
      complexed with bif, mpt, nag, ndg, vlm
      1. region l:1-107 [137074]
    21. 2i5y
      automatically matched to d1g9ml1
      complexed with bif, mpt, nag, ndg, vlm
      1. region q:1-107 [137077]
    22. 1y0l
      automatically matched to d1g9ml1
      complexed with cl, han
      1. region a:1-107 [122486]
    23. 1y0l
      automatically matched to d1g9ml1
      complexed with cl, han
      1. region c:1-107 [122490]
    24. 1y0l
      automatically matched to d1g9ml1
      complexed with cl, han
      1. region e:1-107 [122494]
    25. 1y0l
      automatically matched to d1g9ml1
      complexed with cl, han
      1. region l:1-107 [122500]
    26. 1rz8
      part of anti HIV-1 gp120 Fab 17B
      1. region a:1-109 [98137]
      2. region c:1-109 [98141]
    27. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region a:1-107 [156581]
    28. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region c:1-107 [156585]
    29. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region e:1-107 [156589]
    30. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region g:1-107 [156593]
    31. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region j:1-107 [156599]
    32. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region l:1-107 [156603]
    33. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region m:1-107 [156605]
    34. 3cfk
      automatically matched to d1g9ml1
      complexed with b3p, cd, gol; mutant
      1. region o:1-107 [156609]
    35. 2i60
      automatically matched to d1g9ml1
      complexed with ipa, mpt, nag, ndg, vlm
      1. region l:1-107 [137084]
    36. 2i60
      automatically matched to d1g9ml1
      complexed with ipa, mpt, nag, ndg, vlm
      1. region q:1-107 [137087]
    37. 2ny5
      automatically matched to d1g9ml1
      complexed with nag, suc; mutant
      1. region l:2001-2109 [138792]
    38. 3cfj
      automatically matched to d1g9ml1
      complexed with gol, so4; mutant
      1. region a:1-107 [156565]
    39. 3cfj
      automatically matched to d1g9ml1
      complexed with gol, so4; mutant
      1. region c:1-107 [156569]
    40. 3cfj
      automatically matched to d1g9ml1
      complexed with gol, so4; mutant
      1. region e:1-107 [156573]
    41. 3cfj
      automatically matched to d1g9ml1
      complexed with gol, so4; mutant
      1. region l:1-107 [156579]
    42. 1g9m
      part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
      complexed with fuc, ioh, nag; mutant
      1. region l:1-109 [20262]
    43. 1rzj
      part of anti HIV-1 gp120 Fab 17B
      complexed with fuc, ioh, nag; mutant
      1. region l:1-109 [98203]
    44. 1yyl
      automatically matched to d1g9ml1
      complexed with bif, mpt, nag, ndg, vlm; mutant
      1. region l:1-107 [124225]
    45. 1yyl
      automatically matched to d1g9ml1
      complexed with bif, mpt, nag, ndg, vlm; mutant
      1. region q:1001-1107 [124228]
    46. 1u6a
      automatically matched to d1rhha1
      1. region l:1-107 [119566]
    47. 3dvg
      automatically matched to d1g9ml1
      mutant
      1. region a:5-109 [157888]
    48. 3dvn
      automatically matched to d1g9ml1
      mutant
      1. region a:5-109 [157894]
    49. 3dvn
      automatically matched to d1g9ml1
      mutant
      1. region l:5-109 [157900]
    50. 2qsc
      automatically matched to d1rhha1
      complexed with bma, cl, nag, zn
      1. region l:3-107 [151316]
    51. 1gc1
      part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
      complexed with fuc, nag; mutant
      1. region l:1-109 [20264]
    52. 1y18
      automatically matched to d1g9ml1
      complexed with cl, han; mutant
      1. region a:1-107 [122521]
    53. 1y18
      automatically matched to d1g9ml1
      complexed with cl, han; mutant
      1. region c:1-107 [122525]
    54. 1y18
      automatically matched to d1g9ml1
      complexed with cl, han; mutant
      1. region e:1-107 [122529]
    55. 1y18
      automatically matched to d1g9ml1
      complexed with cl, han; mutant
      1. region l:1-107 [122535]
    56. 2agj
      automatically matched to d1rhha1
      complexed with nag
      1. region l:1-108 [126727]
    57. 2ny6
      automatically matched to d1g9ml1
      complexed with nag, suc; mutant
      1. region c:2001-2109 [138796]
    58. 1rzk
      part of anti HIV-1 gp120 Fab 17B
      complexed with nag; mutant
      1. region l:1-109 [98210]
    59. 1g9n
      part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
      complexed with nag; mutant
      1. region l:1-109 [20266]
    60. 2qr0
      automatically matched to d1g9ml1
      1. region a:1-107 [151234]
    61. 2qr0
      automatically matched to d1g9ml1
      1. region e:1-107 [151240]
    62. 2qr0
      automatically matched to d1g9ml1
      1. region g:1-107 [151244]
    63. 2qr0
      automatically matched to d1g9ml1
      1. region k:1-107 [151250]
    64. 2qr0
      automatically matched to d1g9ml1
      1. region m:1-107 [151254]
    65. 2qr0
      automatically matched to d1g9ml1
      1. region q:1-107 [151260]
    66. 2qr0
      automatically matched to d1g9ml1
      1. region s:1-107 [151264]
    67. 2qr0
      automatically matched to d1g9ml1
      1. region w:1-107 [151270]
    68. 2b4c
      automatically matched to d1rhha1
      complexed with fuc, nag, ndg, so4, xyl; mutant
      1. region l:1-107 [127824]
  5. Mouse (Mus musculus), cluster 1.1 [TaxId: 10090] [88524] (128)
    SQ P01631 #KV2G_MOUSE Ig kappa chain V-II region 26-10; 79% sequence identity ! SQ P06310 # KV2F_HUMAN IG KAPPA CHAIN V-II REGION RPMI 6410 PRECURSOR ! SQ P03976 # KV2E_MOUSE (P03976) Ig kappa chain V-II region 17S29.1 ! SQ P01642 21-115 # ! KV2G_MOUSE IG KAPPA CHAIN V-II REGION 26-10
    1. 1mju
      part of the esterolytic Fab ms6-164
      complexed with gol
      1. region l:1-107 [91304]
    2. 1ncw
      part of cationic cyclization catalytic Fab 4C6
      complexed with bez, gol
      1. region l:1-107 [85557]
    3. 1ruk
      part of cationic cyclization catalytic Fab 4C6
      complexed with act, bez, gol
      1. region l:1-107 [97861]
    4. 1rup
      part of cationic cyclization catalytic Fab 4C6
      complexed with bez, gol
      1. region l:1-107 [97873]
    5. 1dlf
      part of anti-dansyl Fv
      complexed with so4
      1. chain l [20382]
    6. 1rum
      part of cationic cyclization catalytic Fab 4C6
      complexed with 4ht, bez, gol
      1. region l:1-107 [97869]
    7. 2dlf
      part of anti-dansyl Fv
      1. chain l [20384]
    8. 1rur
      part of Diels-Alder catalytic Fab 13G5
      complexed with zn
      1. region l:1-107 [97881]
    9. 1mj8
      part of the esterolytic Fab ms6-164
      complexed with gol, po4
      1. region l:1-107 [91292]
    10. 1q72
      part of anti-cocaine Fab M82G2
      complexed with coc
      1. region l:1-107 [96016]
    11. 1n4x
      part of scFv 1695
      complexed with cl
      1. chain l [85326]
      2. chain m [85327]
    12. 1qyg
      part of anti-cocaine Fab M82G2
      complexed with bcg
      1. region l:1-107 [96591]
    13. 1jgu
      part of catalytic Fab 1D4
      complexed with hbc, oh
      1. region l:1-107 [66690]
    14. 1pz5
      part of Fab Sya/J6
      1. region a:1-107 [95401]
    15. 1f3d
      part of catalytic Fab 4B2
      complexed with so4, tpm
      1. region l:1-107 [20460]
      2. region j:1-107 [20461]
    16. 2ok0
      automatically matched to 2OJZ L:1-107
      1. region l:1-107 [145722]
    17. 1jgv
      part of catalytic Fab 1D4
      1. region l:1-107 [66694]
    18. 1rua
      part of cationic cyclization catalytic Fab 4C6
      complexed with 4ht, act, bez, ghg, gol
      1. region l:1-107 [97857]
    19. 1ruq
      part of Diels-Alder catalytic Fab 13G5
      complexed with zn
      1. region l:1-107 [97877]
    20. 1nqb
      part of scFv trivalent antibody; N-terminal, VH domain is from B1-8 antibody (1A6U CH H); C-terminal, VL domain is from NQ11 antibody
      1. region a:121-233 [20043]
      2. region c:121-233 [20045]
    21. 1riu
      part of anti-cocaine Fab M82G2
      complexed with rbe
      1. region l:1-107 [97520]
    22. 1wz1
      automatically matched to d1dlfl_
      complexed with dns
      1. region l:1-113 [121477]
    23. 1mjj
      part of the esterolytic Fab ms6-164
      complexed with hal, so4
      1. region a:1-107 [91294]
      2. region l:1-107 [91300]
    24. 1kel
      part of Fab 28B4
      complexed with aah
      1. region l:1-112 [20112]
    25. 1a3l
      part of Diels-Alder catalytic Fab 13G5
      complexed with cfc
      1. region l:1-107 [20240]
    26. 1rfd
      part of anti-cocaine Fab M82G2
      1. region l:1-107 [97374]
    27. 1cr9
      part of anti-prion Fab 3F4
      1. region l:1-106a [20430]
    28. 1yej
      part of Fab D2.3
      complexed with pnp, zn
      1. region l:1-107 [20140]
    29. 1f8t
      part of anti-IL2 Fab LNKB-2
      1. region l:1-107 [59707]
    30. 1riv
      part of anti-cocaine Fab M82G2
      complexed with obe
      1. region l:1-107 [97524]
    31. 1rul
      part of cationic cyclization catalytic Fab 4C6
      complexed with 4ht, act, bez, ghg, gol
      1. region l:1-107 [97865]
    32. 1yei
      part of Fab D2.3
      complexed with pnp, zn
      1. region l:1-107 [20142]
    33. 1qkz
      part of Fab MN14C11.6
      1. region l:1-107 [20136]
    34. 1dsf
      part of anticancer Fv B1; disulfide-stabilized
      mutant
      1. chain l [20246]
    35. 1kn4
      part of Fab D2.3
      complexed with pde, zn
      1. region l:1-107 [72767]
    36. 1yec
      part of Fab D2.3
      complexed with pnb, zn
      1. region l:1-107 [20144]
    37. 1kn2
      part of Fab D2.3
      complexed with pne, zn
      1. region l:1-107 [72762]
    38. 1mie
      part of the esterolytic Fab ms6-164
      1. region l:1-107 [91283]
    39. 1l7t
      part of anti-testosterone Fab 77
      1. region l:1-112 [77801]
    40. 1yeg
      part of Fab D2.5
      complexed with act, bpn, zn
      1. region l:1-107 [20154]
    41. 1yef
      part of Fab D2.5
      complexed with pnc, zn
      1. region l:1-107 [20152]
    42. 1ub5
      part of blue fluorescent Fab 19G2
      complexed with spb
      1. region l:1-113 [99149]
      2. region b:1-113 [99145]
    43. 1lo2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
      1. region x:1-112 [74127]
      2. region l:1-112 [74125]
    44. 1lo0
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
      1. region x:1-112 [74119]
      2. region l:1-112 [74117]
    45. 1cfv
      part of Fv 4155
      complexed with e3g, zn
      1. chain l [20160]
    46. 1bfv
      part of Fv 4155
      complexed with stg, zn
      1. chain l [20162]
    47. 1yek
      part of Fab D2.3
      complexed with pnp, zn
      1. region l:1-107 [20146]
    48. 1flr
      part of Fab 4-4-20
      complexed with flu
      1. region l:1-112 [19904]
    49. 1tet
      part of Fab TE33
      complexed with cit
      1. region l:1-107 [19902]
    50. 1fl5
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4; mutant
      1. region l:1-107 [65021]
      2. region a:1-107 [65015]
    51. 1keg
      part of anti-photoproduct Fab 64M-2
      complexed with 64t, ni
      1. region l:1-107 [77347]
    52. 1mh5
      part of the esterolytic Fab ms6-164
      part of anti-testosterone Fab 77
      complexed with hal, so4
      1. region a:1-107 [91266]
      2. region l:1-107 [91272]
    53. 1mj7
      part of the esterolytic Fab ms6-164
      complexed with hal
      1. region l:1-107 [91288]
    54. 1i9j
      part of anti-testosterone Fab
      complexed with tes
      1. region l:1-112 [71146]
    55. 1kem
      part of Fab 28B4
      1. region l:1-112 [20114]
    56. 1yee
      part of Fab D2.5
      complexed with pnb
      1. region l:1-107 [20156]
    57. 1m7d
      part of Fab specific for Y lipopolysaccharide
      complexed with 1na, raa, rae
      1. region a:1-108 [84861]
    58. 1mre
      part of Fab Jel 103
      complexed with gdp, imd, zn
      1. region l:1-108 [20018]
    59. 1c1e
      part of Diels-Alder catalytic Fab 1E9
      complexed with dmr, enh
      1. region l:1-112 [20238]
    60. 1mrd
      part of Fab Jel 103
      complexed with idp, imd, zn
      1. region l:1-108 [20016]
    61. 1axt
      part of catalytic Fab 33F12 with an aldolase activity
      1. region l:1-107 [20304]
    62. 1lo3
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
      1. region x:1-112 [74135]
      2. region l:1-112 [74133]
    63. 1t66
      complexed with flu
      1. region c:1-112 [106545]
      2. region l:1-112 [106551]
    64. 1ru9
      part of cationic cyclization catalytic Fab 4C6
      complexed with 4ht, act, bez, ghg, gol
      1. region l:1-107 [97853]
    65. 2mpa
      part of bactericidal Fab MN12H2 against Neisseria meningitidis
      complexed with cd, cyf, thc
      1. region l:1-112 [20356]
    66. 1ktr
      part of scFv 3d5
      mutant
      1. chain l [72993]
    67. 1mrf
      part of Fab Jel 103
      complexed with imd, oip, zn
      1. region l:1-108 [20020]
    68. 1f90
      part of anti-IL2 Fab LNKB-2
      1. region l:1-107 [59711]
    69. 2bfv
      part of Fv 4155
      complexed with stg
      1. chain l [20164]
    70. 1ub6
      part of blue fluorescent Fab 19G2
      1. region l:2-113 [99157]
      2. region b:2-113 [99153]
    71. 2cgr
      part of an anti-sweetener Fab
      complexed with gas
      1. region l:1-112 [19918]
    72. 1yeh
      part of Fab D2.5
      complexed with zn
      1. region l:1-107 [20158]
    73. 1mrc
      part of Fab Jel 103
      complexed with imd, so4, zn
      1. region l:1-108 [20022]
    74. 1ucb
      part of humanized Fab CBR96
      complexed with so4
      1. region l:4-108 [20100]
    75. 1mnu
      part of bactericidal Fab MN12H2 against Neisseria meningitidis
      complexed with cd1
      1. region l:1-112 [20358]
    76. 2jel
      part of Fab JE142
      complexed with so4
      1. region l:1-108 [19978]
    77. 1m7i
      part of Fab specific for Y lipopolysaccharide
      complexed with nag, raa, rao
      1. region a:1-108 [84865]
    78. 1ehl
      part of anti-photoproduct Fab 64M-2
      complexed with 5ht
      1. region l:1-107 [20502]
    79. 2h1p
      part of polysaccharide binding antibody 2H1
      1. region l:1-113 [20190]
    80. 1fl3
      part of blue fluorescent Fab 19G2
      complexed with spb
      1. region l:2-113 [20485]
      2. region b:2-113 [20487]
    81. 1i9i
      part of anti-testosterone Fab
      1. region l:1-112 [71142]
    82. 1nd0
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
      1. region a:1-107 [85559]
      2. region c:1-107 [85563]
      3. region e:1-107 [85567]
      4. region g:1-107 [85571]
    83. 1a4j
      part of humanized Diels-Alder catalytic Fab; germline precursor
      1. region l:1-112 [20230]
      2. region a:1-112 [20232]
    84. 2ojz
      1. region l:1-107 [145718]
    85. 2ojz
      automatically matched to 2OJZ L:1-107
      1. region m:1-107 [145720]
    86. 1igj
      part of Fab 26-10
      complexed with dgx
      1. region a:1-107 [19818]
      2. region c:1-107 [19820]
    87. 1plg
      part of a polysialic acid-binding Fab
      1. region l:1-112 [20080]
    88. 1mpa
      part of bactericidal Fab MN12H2 against Neisseria meningitidis
      complexed with cd, cyf, thc
      1. region l:1-112 [20134]
    89. 1igi
      part of Fab 26-10
      1. region l:1-107 [19822]
    90. 1cu4
      part of anti-prion Fab 3F4
      1. region l:1-106a [20432]
    91. 1jp5
      part of scFv 1695; complexed with the epitope peptide from HIV-1 protease
      1. region a:1-112 [67001]
      2. region b:1-112 [67003]
    92. 2pcp
      part of Fab 6B5
      complexed with 1pc
      1. region a:1-107 [20370]
      2. region c:1-107 [20372]
    93. 1a4k
      part of humanized Diels-Alder catalytic Fab
      complexed with cd, fra
      1. region l:1-112 [20234]
      2. region a:1-112 [20236]
    94. 1fl6
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah; mutant
      1. region l:1-107 [65029]
      2. region a:1-107 [65023]
    95. 1lmk
      part of scFv diabody L5MK16
      1. region a:201-312 [20035]
      2. region c:201-312 [20037]
      3. region e:201-312 [20039]
      4. region g:201-312 [20041]
    96. 1bln
      part of anti-P-glycoprotein Fab MRK-16
      1. region a:1-107 [20330]
      2. region c:1-107 [20332]
    97. 1rmf
      part of Fab R6.5
      1. region l:1-112 [20028]
    98. 1clz
      part of Fab MBR96
      complexed with fuc, gal, nag, non
      1. region l:1-108 [20104]
    99. 1cly
      part of humanized Fab CBR96
      complexed with fuc, gal, nag, non
      1. region l:3-108 [20102]
    100. 1nbv
      part of Fab BV04-01
      1. region l:1-112 [19898]
    101. 1qfu
      part of Influenza virus hemagglutinin-neutralizing Fab
      complexed with man, nag
      1. region l:1-106b [20292]
    102. 1lo4
      part of retro Diels-Alder catalytic Fab 9D9
      1. region l:1-112 [74141]
    103. 1kfa
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
      1. region l:1-112 [77365]
      2. region m:1-112 [77367]
    104. 1nak
      part of Fab 83.1 against HIV-1 gp120
      1. region l:1-107 [91757]
      2. region m:1-107 [91759]
    105. 1igf
      part of Fab B13I2
      complexed with nag
      1. region l:1-107 [19812]
      2. region m:1-107 [19814]
    106. 1nld
      part of Fab 1583
      1. region l:1-107 [20110]
    107. 1ae6
      part of Fab CTM01
      1. region l:1-106a [20210]
    108. 1dbj
      part of Fab DB3
      complexed with ae2
      1. region l:1-107 [19800]
    109. 1m71
      part of Fab specific for Y lipopolysaccharide
      1. region a:1-108 [84851]
    110. 1yed
      part of Fab D2.4
      complexed with pnb
      1. region l:1-107 [20148]
      2. region a:1-107 [20150]
    111. 1cbv
      part of Fab BV04-01
      1. region l:1-112 [19900]
    112. 1cl7
      part of Fab 1696 against HIV-1 protease
      1. region l:1-107 [20418]
    113. 1dba
      part of Fab DB3
      complexed with eoh
      1. region l:1-107 [19802]
    114. 1dbb
      part of Fab DB3
      complexed with str
      1. region l:1-107 [19798]
    115. 1dbm
      part of Fab DB3
      complexed with sih
      1. region l:1-107 [19804]
    116. 2igf
      part of Fab B13I2
      complexed with nag
      1. region l:1-107 [19816]
    117. 1dbk
      part of Fab DB3
      complexed with ano
      1. region l:1-107 [19806]
    118. 2dbl
      part of Fab DB3
      complexed with s5h
      1. region l:1-107 [19808]
    119. 1fpt
      part of neutralizing type 1 poliovirus Fab C3
      1. region l:1-108 [20030]
    120. 1cgs
      part of an anti-sweetener Fab
      1. region l:1-112 [19920]
    121. 4fab
      part of Fab 4-4-20
      complexed with fds, mpd
      1. region l:1-112 [19906]
    122. 1mak
      VL of antibody 26-10 only
      1. chain a [19825]
    123. 1maj
      VL of antibody 26-10 only
      1. chain a [19824]
    124. 1s3k
      MQ NA # artificial chimera
      complexed with fuc, gal, gol, nag
      1. region l:1-112 [105239]
    125. 1uz8
      MQ P03976 P01837 # ! natural chimera
      complexed with fuc, gal, mag
      1. region a:1-106 [108166]
      2. region l:1-106 [108172]
    126. 1uz6
      MQ P03976 P01837 # ! natural chimera
      complexed with so4
      1. region e:1-106 [108150]
      2. region l:1-106 [108156]
      3. region m:1-106 [108158]
      4. region v:1-106 [108162]
    127. 1vpo
      MQ P01631 P01837
      complexed with tes
      1. region l:1-112 [113972]
    128. 1s5i
      MQ P06310 P01837
      1. region l:1-107 [105274]
  6. Mouse (Mus musculus), cluster 1.2 [TaxId: 10090] [88525] (36)
    1. 1q9r
      part of Fab s25-2
      complexed with kda, kdo, mg, zn
      1. region a:1-107 [96305]
    2. 1q9q
      part of Fab s25-2
      complexed with kda, kdo, mg, zn
      1. region a:1-107 [96301]
    3. 1nlb
      part of anti-HCV Fab 19D9D6
      1. region l:1-107 [80623]
    4. 1q9v
      part of Fab s25-2
      complexed with kdo, mg, zn
      1. region a:1-107 [96316]
    5. 1mvu
      part of P-glycoprotein-specific scFv C219; complexed with synthetic epitope peptide, chain P
      complexed with so4; mutant
      1. chain a [91474]
    6. 1q9t
      part of Fab s25-2
      complexed with kda, kdo, mg, zn
      1. region a:1-107 [96310]
    7. 2imm
      VL domain only of MCPC603
      complexed with ace, so4
      1. chain a [19857]
    8. 1q9w
      part of Fab s45-18
      complexed with gp1, gp4, kdo, mg
      1. region a:1-107 [96320]
      2. region c:1-107 [96324]
    9. 1q9o
      part of Fab s45-18
      complexed with mg
      1. region a:1-107 [96292]
      2. region c:1-107 [96296]
    10. 1a3r
      part of Fab 8F5
      complexed with nh2
      1. region l:1-114 [19780]
    11. 1mhh
      part of anti-HCV Fab 19D9D6
      complexed with aea, edo; mutant
      1. region a:1-107 [79119]
      2. region c:1-107 [79123]
    12. 1sbs
      part of anti-HCG Fab 3A2
      complexed with so4
      1. region l:1-113 [20366]
    13. 1hil
      part of Fab 17/9
      1. region a:1-108 [19786]
      2. region c:1-108 [19788]
    14. 1q9k
      part of Fab s25-2
      complexed with mg
      1. region a:1-107 [96276]
    15. 1il1
      part of anti-HIV Fab G3-519
      1. region b:1-112 [62541]
    16. 43c9
      part of sterolytic and amidolytic Fv 43c9
      1. chain a [20386]
      2. chain c [20388]
      3. chain e [20390]
      4. chain g [20392]
    17. 2ck0
      part of anti-anti-idiotypic Fab against human angiotensin II, complex with a synthetic cyclic peptide
      1. region l:1-117 [100855]
    18. 43ca
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
      1. chain a [20394]
      2. chain c [20396]
      3. chain e [20398]
      4. chain g [20400]
    19. 1n64
      part of anti-HCV Fab 19D9D6; complex with peptide, chain P (related to 1cwx)
      1. region l:1-107 [80116]
    20. 1q9l
      part of Fab s25-2
      complexed with mg, zn
      1. region a:1-107 [96280]
      2. region c:1-107 [96284]
    21. 1ck0
      part of anti-anti-idiotypic Fab against human angiotensin II, unliganded form
      1. region l:1-117 [90424]
    22. 2ap2
      part of P-glycoprotein-specific scFv C219
      1. chain a [20178]
      2. chain c [20180]
    23. 1frg
      part of Fab 26/9
      complexed with nh2
      1. region l:1-113 [19924]
    24. 1ifh
      part of Fab 17/9
      1. region l:1-108 [19790]
    25. 1ap2
      part of P-glycoprotein-specific scFv C219
      1. chain a [20182]
      2. chain c [20184]
    26. 3ck0
      part of anti-anti-idiotypic Fab against human angiotensin II, complex with angiotensin II
      1. region l:1-117 [100867]
    27. 1h3p
      part of anti-hepatitis B Fab (against PRES1 region)
      1. region l:1-107 [76650]
    28. 1him
      part of Fab 17/9; chain identifiers are mixed up
      complexed with nh2
      1. region h:1-108 [19793]
      2. region j:1-108 [19795]
    29. 1bbd
      part of Fab 8F5
      complexed with so4
      1. region l:1-114 [19782]
    30. 1a5f
      part of an anti-E-selectin Fab
      1. region l:1-113 [20302]
    31. 1mcp
      part of Fab MCPC603
      complexed with so4
      1. region l:1-114 [19858]
    32. 1pkq
      part of humanized Fab 8-18c5
      1. region a:1-107 [88148]
      2. region f:1-107 [88153]
    33. 2mcp
      part of Fab MCPC603
      complexed with pc
      1. region l:1-114 [19860]
    34. 1hin
      part of Fab 17/9
      1. region l:1-108 [19796]
    35. 2dtg
      mutant
      1. region b:1-112 [145095]
    36. 1t4k
      MQ P01632 P01837 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
      1. region a:1-107 [112235]
      2. region c:1-107 [112239]
  7. Mouse (Mus musculus), cluster 2 [TaxId: 10090] [88526] (34)
    1. 1j05
      part of anti-CEA Fv T84.66
      complexed with gol, po4
      1. chain a [90735]
      2. chain l [90738]
    2. 1f58
      part of anti-gp120 (HIV-1) Fab 58.2
      mutant
      1. region l:1-107 [20350]
    3. 1h0d
      part of anti-angiogenin FAB; conflict: annotated in PDB as human
      complexed with gol, pca, so4
      1. region a:1-106 [83425]
    4. 2hrp
      part of Fab F11.2.32 against HIV-1 protease
      1. region l:1-107 [20170]
      2. region m:1-107 [20172]
    5. 1i7z
      part of humanized Fab GNC92H2
      complexed with coc
      1. region a:1-107 [61919]
      2. region c:1-107 [61923]
    6. 1ejo
      part of anti-FMDV Fab 4C4
      1. region l:2001-2111 [20428]
    7. 1iqw
      part of anti-human Fas Fab HFE7a
      1. region l:1-111 [66279]
    8. 1mf2
      part of Fab F11.2.32 against HIV-1 protease
      1. region l:1-107 [20174]
      2. region m:1-107 [20176]
    9. 2gcy
      automatically matched to d1egjl1
      complexed with so4
      1. region a:2-111 [134994]
    10. 1moe
      part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
      complexed with so4
      1. region a:1-119 [85030]
      2. region b:1-119 [85032]
    11. 2aab
      1. region l:1-107 [144795]
    12. 2nyy
      automatically matched to d1egjl1
      complexed with ca, zn
      1. region c:2-111 [138829]
    13. 3f58
      part of anti-gp120 (HIV-1) Fab 58.2
      mutant
      1. region l:1-107 [20352]
    14. 2f58
      part of anti-gp120 (HIV-1) Fab 58.2
      complexed with arn
      1. region l:1-107 [20354]
    15. 1ggb
      part of Fab 50.1
      1. region l:1-107 [19874]
    16. 1ibg
      part of Fab 40-50
      complexed with cu, obn
      1. region l:2-107 [20048]
    17. 1ggc
      part of Fab 50.1
      1. region l:1-107 [19880]
    18. 2gsi
      automatically matched to d1egjl1
      complexed with na
      1. region a:1-107 [135579]
    19. 2gsi
      automatically matched to d1egjl1
      complexed with na
      1. region c:1-107 [135581]
    20. 2gsi
      automatically matched to d1egjl1
      complexed with na
      1. region e:1-107 [135583]
    21. 2gsi
      automatically matched to d1egjl1
      complexed with na
      1. region g:1-107 [135585]
    22. 1ggi
      part of Fab 50.1
      1. region l:1-107 [19876]
      2. region m:1-107 [19878]
    23. 1f11
      part of anti-Pres2 Fab F124
      1. region a:1-107 [20456]
      2. region c:1-107 [20458]
    24. 1egj
      part of Fab 13B5 against cytokine receptor common beta chain domain 4
      complexed with nag
      1. region l:1-107 [20500]
    25. 1ai1
      part of Fab 59.1
      1. region l:1-108 [19882]
    26. 1nsn
      part of Fab N10
      1. region l:1-107 [20070]
    27. 1acy
      part of Fab 59.1
      1. region l:1-108 [19884]
    28. 1afv
      part of Fab 25.3 against HIV-1 capsid protein (p24)
      complexed with pb
      1. region l:1-112 [20130]
      2. region m:1-112 [20132]
    29. 32c2
      part of the cytochrome P450-arom activity suppressing Fab 32C2
      1. region a:1-110 [20438]
    30. 2nz9
      automatically matched to d1egjl1
      complexed with ca, zn
      1. region c:2-111 [138840]
    31. 2nz9
      automatically matched to d1egjl1
      complexed with ca, zn
      1. region e:2-111 [138844]
    32. 1qnz
      part of anti-HIV Fv 0.5B
      1. chain l [20448]
    33. 1qfw
      part of anti-[gonadotropin alpha subunit] Fv
      complexed with nag
      1. chain l [20434]
    34. 2r69
      automatically matched to d1ejol1
      1. region l:1-111 [151602]
  8. Mouse (Mus musculus), cluster 3.1 [TaxId: 10090] [88527] (14)
    1. 1ors
      part of anti-VD potassium channel KVAP Fab 33H1
      1. region a:1-107 [87349]
    2. 35c8
      part of catalytic Fab 5C8
      complexed with nox
      1. region l:1-107 [20296]
    3. 25c8
      part of catalytic Fab 5C8
      complexed with gep
      1. region l:1-107 [20298]
    4. 1cf8
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd, haz
      1. region l:1-107 [20378]
    5. 15c8
      part of catalytic Fab 5C8
      1. region l:1-107 [20300]
    6. 1hq4
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
      1. region a:1-107 [83621]
      2. region c:1-107 [83625]
    7. 1iai
      part of Fab 409.5.3
      1. region m:1-109 [20074]
    8. 1ob1
      part of anti-Pf MSP1 Fab
      complexed with cac
      1. region a:1-106a [86748]
      2. region d:1-106a [86754]
    9. 1orq
      part of anti-VD potassium channel KVAP Fab 6E1
      complexed with cd, k; mutant
      1. region a:1-108 [87344]
    10. 1aif
      part of Fab 409.5.3
      1. region a:1-109 [20076]
      2. region l:1-109 [20078]
    11. 1fig
      part of catalytic antibody 1F7 with chorismate mutase activity
      complexed with tsa
      1. region l:1-108 [19922]
    12. 1ken
      part of Fab against influenza virus hemagglutinin
      complexed with man, nag
      1. region l:1-108 [72381]
      2. region u:1-108 [72385]
    13. 2a0l
      automatically matched to d1orsa1
      complexed with k
      1. region c:1-105 [125956]
    14. 2a0l
      automatically matched to d1orsa1
      complexed with k
      1. region e:1-105 [125958]
  9. Mouse (Mus musculus), cluster 3.2 [TaxId: 10090] [88528] (65)
    SQ P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1
    1. 1yqv
      automatically matched to d1eo8l1
      1. region l:2-107 [123900]
    2. 1ay1
      part of Fab TP7 against Taq DNA polymerase
      1. region l:1-107 [20242]
    3. 1qok
      part of anti-carcinoembryonic scFv MFE-23
      1. region a:162-267 [20493]
    4. 2bmk
      automatically matched to d1dqdl1
      complexed with iod, pdd
      1. region a:1-107 [128798]
    5. 2bmk
      automatically matched to d1dqdl1
      complexed with iod, pdd
      1. region l:1-107 [128800]
    6. 2z92
      automatically matched to d1dqdl1
      complexed with cit, ene
      1. region b:1-107 [154226]
    7. 1dqd
      part of Fab HGR-2 F6, a competitive antagonist of the glucagon receptor
      1. region l:1-106 [20440]
    8. 2b2x
      automatically matched to d1dqdl1
      complexed with mg; mutant
      1. region l:2-106 [127750]
    9. 2b2x
      automatically matched to d1dqdl1
      complexed with mg; mutant
      1. region m:2-106 [127752]
    10. 2j4w
      automatically matched to d1dqdl1
      mutant
      1. region l:3-107 [138007]
    11. 1bgx
      part of Fab TP7 against Taq DNA polymerase
      1. region l:1-107 [20244]
    12. 1wcb
      automatically matched to d1dqdl1
      complexed with iod, pe1
      1. region a:1-107 [120882]
    13. 1wcb
      automatically matched to d1dqdl1
      complexed with iod, pe1
      1. region l:1-107 [120884]
    14. 1for
      part of Fab 17-Ia
      1. region l:1-107 [19988]
    15. 2z91
      automatically matched to d1dqdl1
      1. region b:1-107 [154220]
    16. 2z91
      automatically matched to d1dqdl1
      1. region d:1-107 [154223]
    17. 1mim
      part of CD25-binding humanized Fab CHI621
      1. region l:1-105 [20128]
    18. 1bql
      part of Fab HyHEL-5
      part of Fab HyHEL-5
      1. region l:1-106 [19970]
    19. 1psk
      part of antibody against the melanoma associated gd2 ganglioside
      1. region l:1-106 [20138]
    20. 1eo8
      part of Influenza virus hemagglutinin-neutralizing Fab BH151
      complexed with man, nag
      1. region l:1-106b [20294]
    21. 1ots
      part of anti-CLC chloride channel Fab
      complexed with cl
      1. region d:1-106 [87419]
      2. region f:1-106 [87423]
    22. 2osl
      automatically matched to d1dqdl1
      1. region b:2-106 [139296]
    23. 2osl
      automatically matched to d1dqdl1
      1. region l:2-106 [139298]
    24. 2z93
      automatically matched to d1dqdl1
      complexed with end
      1. region d:1-107 [154230]
    25. 1baf
      part of Fab ANO2
      complexed with npp
      1. region l:1-108 [19778]
    26. 2iff
      part of Fab HyHEL-5
      mutant
      1. region l:1-106 [19972]
    27. 1wc7
      automatically matched to d1dqdl1
      complexed with iod, pp3
      1. region a:1-107 [120878]
    28. 1wc7
      automatically matched to d1dqdl1
      complexed with iod, pp3
      1. region l:1-107 [120880]
    29. 1v7m
      part of anti-trombopoetin Fab tn1
      1. region l:1-107 [100454]
      2. region m:1-107 [100456]
    30. 2fed
      automatically matched to d1dqdl1
      mutant
      1. region d:1-105 [133333]
    31. 2fed
      automatically matched to d1dqdl1
      mutant
      1. region f:1-105 [133335]
    32. 2j5l
      automatically matched to d1dqdl1
      mutant
      1. region b:3-107 [138045]
    33. 2htk
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [136745]
    34. 2htk
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [136747]
    35. 2ht4
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [136738]
    36. 2ht4
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [136740]
    37. 2h2p
      automatically matched to d1dqdl1
      complexed with sek
      1. region d:1-105 [136018]
    38. 2h2p
      automatically matched to d1dqdl1
      complexed with sek
      1. region f:1-105 [136020]
    39. 2exw
      automatically matched to d1dqdl1
      1. region d:1-105 [132568]
    40. 2exw
      automatically matched to d1dqdl1
      1. region f:1-105 [132570]
    41. 2htl
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [136749]
    42. 2htl
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [136751]
    43. 2hlf
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [136566]
    44. 2hlf
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [136568]
    45. 2fee
      automatically matched to d1dqdl1
      1. region l:1-105 [133339]
    46. 2fee
      automatically matched to d1dqdl1
      1. region o:1-105 [133341]
    47. 2h2s
      automatically matched to d1dqdl1
      complexed with sek; mutant
      1. region d:1-105 [136024]
    48. 2h2s
      automatically matched to d1dqdl1
      complexed with sek; mutant
      1. region f:1-105 [136026]
    49. 1ott
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
      1. region d:1-106 [87429]
      2. region f:1-106 [87433]
    50. 2ht3
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [136734]
    51. 2ht3
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [136736]
    52. 2ht2
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [136730]
    53. 2ht2
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [136732]
    54. 2ez0
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region d:1-105 [132606]
    55. 2ez0
      automatically matched to d1dqdl1
      complexed with br; mutant
      1. region f:1-105 [132608]
    56. 2fec
      automatically matched to d1dqdl1
      mutant
      1. region l:1-105 [133329]
    57. 2fec
      automatically matched to d1dqdl1
      mutant
      1. region o:1-105 [133331]
    58. 1v7n
      part of anti-trombopoetin Fab tn1
      mutant
      1. region l:1-107 [100468]
      2. region m:1-107 [100470]
      3. region n:1-107 [100472]
      4. region o:1-107 [100474]
    59. 1z3g
      1. region l:1-106 [144733]
    60. 1z3g
      automatically matched to 1Z3G L:1-106
      1. region m:1-106 [144735]
    61. 1otu
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
      1. region d:1-106 [87439]
      2. region f:1-106 [87443]
    62. 2exy
      automatically matched to d1dqdl1
      mutant
      1. region d:1-105 [132574]
    63. 2exy
      automatically matched to d1dqdl1
      mutant
      1. region f:1-105 [132576]
    64. 1rvf
      part of Fv 17-Ia
      1. chain l [19990]
    65. 1sy6
      MQ P04940 P01837 # natural chimera
      1. region l:1-106 [106115]
  10. Mouse (Mus musculus), cluster 3.3 [TaxId: 10090] [88529] (2)
    1. 1clo
      part of Fab A5B7
      1. region l:1-107 [20122]
    2. 1a6t
      part of human rhinovirus 14 neutralizing Fab Mab1-IA
      1. region a:1-107 [20248]
      2. region c:1-107 [20250]
  11. Mouse (Mus musculus), cluster 3.4 [TaxId: 10090] [88530] (6)
    1. 1e6o
      part of Fab 13B5 against HIV-1 capsid protein p24
      1. region l:1-105 [20494]
    2. 2fat
      automatically matched to 2FD6 L:1-106A
      1. region l:1-106a [147017]
    3. 2fd6
      complexed with edo, etx, fuc, nag, pg4, pge, so4
      1. region l:1-106a [145157]
    4. 2fbj
      part of Fab J539
      complexed with fuc, nag, zn
      1. region l:1-109 [19850]
    5. 1e6j
      part of Fab 13B5 against HIV-1 capsid protein p24
      mutant
      1. region l:1-105 [20496]
    6. 3bt2
      automatically matched to 2FD6 L:1-106A
      complexed with nag
      1. region l:1-106a [155545]
  12. Mouse (Mus musculus), cluster 4 [TaxId: 10090] [88531] (189)
    SQ P01645 1-106 # 95% sequense identity; KV5L_MOUSE Ig kappa chain V-V region HP 93G7 ! SQ NA # natural chimera; best hits are: SQ P01637 (Ig kappa chain V-V region T1) and SQ P01837 (Ig kappa chain C region) ! SQ NA # humanized antibody ! SQ NA # part of Fab 28 against HIV-1 RT ! SQ P01642 21-115 # ! KV5I_MOUSE Ig kappa chain V-V region L7 precursor
    1. 1mqk
      part of Fv against Paracoccus denitrificans cytochrome c oxidase
      1. chain l [85054]
    2. 1mex
      part of Fab 29g12
      complexed with rac
      1. region l:1-107 [91259]
    3. 1a2y
      part of Fv D1.3
      complexed with po4; mutant
      1. chain a [19926]
    4. 1c5c
      part of humanized catalytic Fab 21D8 with a decarboxylase activity
      complexed with gol, tk4
      1. region l:1-107 [20474]
    5. 1um5
      complexed with ss1
      1. region l:2-109 [113304]
    6. 1vfa
      part of Fv D1.3
      1. chain a [19928]
    7. 1p7k
      part of anti-ssDNA Fab
      complexed with 1pe, epe, gol, peg, so4
      1. region l:1-107 [94293]
      2. region a:1-107 [94287]
    8. 1j1p
      part of Fv HyHEL-10
      mutant
      1. chain l [77061]
    9. 1g7j
      part of Fv D1.3
      mutant
      1. chain a [19932]
    10. 2dqd
      automatically matched to d3hfml1
      mutant
      1. region l:1-107 [131621]
    11. 1j1o
      part of Fv HyHEL-10
      mutant
      1. chain l [77058]
    12. 1j1x
      part of Fv HyHEL-10
      mutant
      1. chain l [77064]
    13. 2dqj
      automatically matched to d3hfml1
      1. region l:1-107 [131636]
    14. 1vfb
      part of Fv D1.3
      1. chain a [19930]
    15. 1i8k
      part of dsFv MR1; complex with a EGFR-VIII peptide
      mutant
      1. chain a [71130]
    16. 2dqc
      automatically matched to d3hfml1
      mutant
      1. region l:1-107 [131619]
    17. 1uac
      part of Fv HyHEL-10
      mutant
      1. chain l [99133]
    18. 1n7m
      part of metal chelatase catalytic Fab 7G12; germline antibody; chain identifiers are probably mixed up
      complexed with mmp
      1. region h:1-107 [80252]
    19. 1kcv
      part of anti-hepatitis B Fab pc282
      1. region l:1-107 [72317]
    20. 1g7m
      part of Fv D1.3
      mutant
      1. chain a [19936]
    21. 1um4
      complexed with sh4
      1. region l:2-109 [113300]
    22. 2adf
      automatically matched to d1a0ql1
      complexed with acy, gol, so4
      1. region l:2-107 [126586]
    23. 2dqe
      automatically matched to d3hfml1
      mutant
      1. region l:1-107 [131623]
    24. 1nby
      part of anti-lysozyme Fab HYHEL-63
      mutant
      1. region a:1-107 [85536]
    25. 1g7i
      part of Fv D1.3
      complexed with po4; mutant
      1. chain a [19934]
    26. 1fns
      part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function
      mutant
      1. region l:1-107 [20288]
    27. 1r3j
      part of Fab against potassium channel KcsA
      complexed with dga, f09, tl; mutant
      1. region a:1-107 [96928]
    28. 1xiw
      1. chain c [115369]
      2. chain g [115373]
    29. 1dqq
      part of anti-lysozyme Fab HYHEL-63
      1. region a:1-107 [20420]
      2. region c:1-107 [20422]
    30. 1wej
      part of anti-cytochrome c Fab E8
      complexed with ace, hem, zn
      1. region l:1-107 [20360]
    31. 1ndg
      a part of Fab HYHEL-8, L chain is identical to HYHEL-63
      complexed with acy; mutant
      1. region a:1-107 [85576]
    32. 1k4c
      part of Fab against potassium channel KcsA
      complexed with dga, f09, k; mutant
      1. region b:1-107 [68128]
    33. 1kiq
      part of Fv D1.3
      mutant
      1. chain a [19938]
    34. 1a7n
      part of Fv D1.3
      mutant
      1. chain l [19940]
    35. 1nbz
      part of anti-lysozyme Fab HYHEL-63
      mutant
      1. region a:1-107 [85541]
    36. 1a7r
      part of Fv D1.3
      mutant
      1. chain l [19944]
    37. 1ua6
      part of Fv HyHEL-10
      mutant
      1. chain l [99130]
    38. 1um6
      1. region l:2-109 [113308]
    39. 1h8n
      part of anti-ampicillin scFv
      complexed with gol, so4; mutant
      1. region a:3-109 [60783]
    40. 1g7l
      part of Fv D1.3
      mutant
      1. chain a [19958]
    41. 1g7h
      part of Fv D1.3
      mutant
      1. chain a [19948]
    42. 1p2c
      part of anti-lysozyme Fab F10.6.6
      1. region a:1-107 [93915]
      2. region d:901-1007 [93920]
    43. 1c5b
      part of humanized catalytic Fab 21D8 with a decarboxylase activity
      1. region l:1-107 [20476]
    44. 1kir
      part of Fv D1.3
      mutant
      1. chain a [19946]
    45. 1a7o
      part of Fv D1.3
      mutant
      1. chain l [19942]
    46. 1a7q
      part of Fv D1.3
      mutant
      1. chain l [19954]
    47. 1osp
      part of Fab 184.1 against OspA
      mutant
      1. region l:1-107 [20116]
    48. 1dqj
      part of anti-lysozyme Fab HYHEL-63
      1. region a:1-107 [20424]
    49. 12e8
      part of Fab 2E8 specific to the low density lipoprotein receptor binding region of apolipoprotein E
      1. region l:1-107 [20268]
      2. region m:1-107 [20270]
    50. 1jgl
      part of anti-estradiol Fab 57-2
      complexed with est
      1. region l:1-107 [66681]
    51. 2dqi
      mutant
      1. region l:1-107 [145087]
    52. 1jfq
      part of Fab 36-71
      1. region l:1-108 [66648]
    53. 1a7p
      part of Fv D1.3
      complexed with acy; mutant
      1. chain l [19950]
    54. 1e4w
      part of anti-TGFalpha Fab TAB2
      complexed with cl, ni
      1. region l:1-107 [59234]
    55. 1kip
      part of Fv D1.3
      mutant
      1. chain a [19956]
    56. 1ic7
      part of Fv HyHEL-10
      mutant
      1. chain l [62259]
    57. 3cx5
      automatically matched to d1ezvy_
      complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
      1. region k:1-107 [157091]
    58. 3cx5
      automatically matched to d1ezvy_
      complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
      1. region v:1-107 [157107]
    59. 1dvf
      part of Fv E5.2, anti-idiotopic antibody to D1.3
      CASP1
      complexed with zn
      1. chain c [20106]
    60. 1dvf
      part of Fv D1.3
      CASP1
      complexed with zn
      1. chain a [19952]
    61. 1fe8
      part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain
      complexed with cac, fuc, nag
      1. region l:1-107 [59792]
      2. region m:1-107 [59794]
      3. region n:1-107 [59796]
    62. 1gaf
      part of humanized Fab 48G7
      complexed with npe
      1. region l:1-109 [20082]
    63. 1i8m
      part of anti-ssDNA Fab
      complexed with so4
      1. region l:1-107 [66088]
      2. region a:1-107 [66082]
    64. 1aj7
      part of humanized Fab 48G7
      complexed with npe
      1. region l:1-109 [20084]
    65. 1s5h
      complexed with dga, f09, k; mutant
      1. region a:1-107 [105267]
    66. 1k4d
      part of Fab against potassium channel KcsA
      complexed with dga, f09, k, na; mutant
      1. region b:1-107 [68133]
    67. 1d5i
      part of humanized oxy-cope catalytic Fab az-28
      1. region l:1-107 [20194]
    68. 1ndm
      a part of Fab HYHEL-26, L chain is identical to HYHEL-63
      mutant
      1. region a:1-107 [85581]
    69. 2rcs
      part of humanized Fab 48G7
      1. region l:1-109 [20086]
    70. 1r3i
      part of Fab against potassium channel KcsA
      complexed with dga, f09, rb; mutant
      1. region l:1-107 [96926]
    71. 1e4x
      part of anti-TGFalpha Fab TAB2
      1. region l:1-107 [59240]
      2. region m:1-107 [59242]
    72. 1d6v
      part of humanized oxy-cope catalytic Fab az-28
      1. region l:1-107 [20196]
    73. 1bm3
      part of anti-integrin Fab OPG2
      1. region l:1-107 [20066]
    74. 6fab
      part of Fab 36-71
      1. region l:1-108 [19908]
    75. 1i3g
      part of anti-ampicillin scFv
      complexed with mpd
      1. chain l [66019]
    76. 1r3l
      part of Fab against potassium channel KcsA
      complexed with cs, dga, f09; mutant
      1. region a:1-107 [96938]
    77. 1ic5
      part of Fv HyHEL-10
      mutant
      1. chain l [62255]
    78. 1dzb
      part of anti-lysozyme scFv 1F9
      1. region a:201-307 [20489]
      2. region b:201-307 [20491]
    79. 1i8i
      part of dsFv MR1; complex with a EGFR-VIII peptide
      mutant
      1. chain a [71128]
    80. 1oak
      part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function
      1. region l:1-107 [20290]
    81. 1ct8
      part of catalytic Fab 7C8
      1. region a:1-107 [20408]
      2. region c:1-107 [20410]
    82. 2dqg
      automatically matched to d3hfml1
      mutant
      1. region l:1-107 [131629]
    83. 1a0q
      part of catalytic antibody 29G11 with esterase activity
      complexed with hep, zn
      1. region l:2-108 [20286]
    84. 1jhk
      part of anti-estradiol Fab 57-2
      1. region l:1-107 [66717]
    85. 2dqh
      automatically matched to d3hfml1
      mutant
      1. region l:1-107 [131631]
    86. 1opg
      part of anti-integrin Fab OPG2
      1. region l:1-107 [20068]
    87. 1dqm
      part of anti-lysozyme Fab HYHEL-63
      1. region l:1-107 [20426]
    88. 1kb9
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with cdl, fes, hem, pcf, pef, pie, sma, umq, uq6
      1. chain k [77326]
    89. 1mlb
      part of Fab D44.1
      1. region a:1-108 [20050]
    90. 1emt
      part of anti-C60 fullerene Fab
      1. region l:1-107 [20482]
    91. 1kcu
      part of anti-hepatitis B Fab pc287
      1. region l:1-107 [72313]
    92. 1qbl
      part of anti-cytochrome c Fab E8
      1. region l:1-107 [20362]
    93. 3fct
      part of metal chelatase catalytic Fab 7G12; mature antibody
      complexed with ca, cd, mg, mmp, na
      1. region a:1-107 [20374]
      2. region c:1-107 [20376]
    94. 1bj1
      part of humanized Fab-12 neutralizing VEGF
      complexed with so4
      1. region l:1-107 [20322]
      2. region j:1-107 [20324]
    95. 2ibz
      automatically matched to d1ezvy_
      complexed with fes, hem, sma, uq6
      1. region y:1-107 [137230]
    96. 1h8s
      part of anti-ampicillin scFv
      complexed with aic, so4; mutant
      1. region a:4-111 [60789]
      2. region b:4-112 [60791]
    97. 1nmb
      part of Fab NC10; only Fv coordinates are included
      complexed with ca, man, nag; mutant
      1. chain l [20062]
    98. 3ehb
      automatically matched to d1mqkl_
      complexed with ca, cu, hea, lda, lmt, mg, per; mutant
      1. region d:1-109 [158153]
    99. 1ic4
      part of Fv HyHEL-10
      mutant
      1. chain l [62252]
    100. 1ezv
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with fes, hem, sma, uq6
      1. chain y [59555]
    101. 1c08
      part of Fv HyHEL-10
      1. chain a [19974]
    102. 1ikf
      part of an anti-cyclosporin A Fab
      complexed with aba
      1. region l:1-107 [20032]
    103. 1rih
      part of Fab 14F7
      1. region l:1-107 [97511]
    104. 1k6q
      part of anti-human tissue factor Fab D3
      1. region l:1-107 [72094]
    105. 3cmo
      automatically matched to d1a0ql1
      1. region l:2-108 [156837]
    106. 3cmo
      automatically matched to d1a0ql1
      1. region x:2-108 [156839]
    107. 3cxh
      automatically matched to d1ezvy_
      complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
      1. region k:1-107 [157124]
    108. 3cxh
      automatically matched to d1ezvy_
      complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
      1. region v:1-107 [157140]
    109. 1qbm
      part of anti-cytochrome c Fab E8
      1. region l:1-107 [20364]
    110. 1fdl
      part of Fab D1.3
      1. region l:1-107 [19960]
    111. 1nmc
      part of Fab NC10; only Fv coordinates are included
      complexed with ca, man, nag
      1. chain l [20056]
      2. chain c [20059]
    112. 1h8o
      part of anti-ampicillin scFv
      complexed with so4; mutant
      1. region a:4-111 [60785]
      2. region b:4-112 [60787]
    113. 2j88
      automatically matched to d1a0ql1
      1. region l:2-108 [138137]
    114. 1cz8
      part of humanized Fab-12 neutralizing VEGF; affinity matured
      complexed with so4; mutant
      1. region l:1-107 [20326]
      2. region x:1-107 [20328]
    115. 1hkl
      part of humanized Fab 48G7
      1. region l:1-109 [20088]
    116. 1eap
      part of Fab 17E8
      complexed with hep
      1. region a:1-107 [20014]
    117. 1kcs
      part of anti-hepatitis B Fab pc282; complex with ps1 peptide
      1. region l:1-107 [72309]
    118. 1p84
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with 3pe, 3ph, cdl, dbt, fes, hem, pc1, umq, uq6
      1. chain k [87865]
    119. 1ncb
      part of Fab NC41
      complexed with ca, man, nag; mutant
      1. region l:1-108 [19980]
    120. 1fgn
      part of anti-human tissue factor Fab 5G9
      1. region l:1-108 [20216]
    121. 2dqf
      automatically matched to d3hfml1
      mutant
      1. region a:1-107 [131625]
    122. 2dqf
      automatically matched to d3hfml1
      mutant
      1. region d:1-107 [131627]
    123. 1bz7
      part of humanized Fab R24 from murine ascites
      1. region a:1-107 [20402]
    124. 1cic
      part of Fab D1.3
      1. region c:1-107 [19962]
    125. 1cic
      part of D1.3 anti-idiotope Fab E225
      1. region a:1-107 [19964]
    126. 1a14
      part of Fab NC10; only Fv coordinates are included
      complexed with ca, man, nag
      1. chain l [20060]
    127. 1kc5
      part of anti-hepatitis B Fab pc287; complex with ps1 peptide
      1. region l:1-107 [72296]
    128. 1nca
      part of Fab NC41
      complexed with ca, man, nag
      1. region l:1-108 [19982]
    129. 1c12
      part of antibody directed against the musk odorant traseolide
      complexed with trz
      1. region a:1-107 [20380]
    130. 1ar1
      part of Fv against Paracoccus denitrificans cytochrome c oxidase
      complexed with ca, cu, hea, lda, mg
      1. chain d [20206]
    131. 1fj1
      part of Fab LA-2 against OspA
      1. region a:1-107 [20118]
      2. region c:1-107 [20120]
    132. 1mlc
      part of Fab D44.1
      1. region a:1-108 [20052]
      2. region c:1-108 [20054]
    133. 1fh5
      part of Fab MAK33; conflict: annotated in PDB as human protein
      1. region l:2-108 [20464]
    134. 1jhl
      part of Fv D11.15
      1. chain l [19966]
    135. 1ncd
      part of Fab NC41
      complexed with ca, man, nag
      1. region l:1-108 [19984]
    136. 1mam
      part of Fab Yst9.1
      1. region l:1-108 [19886]
    137. 2f19
      part of Fab R19.9
      1. region l:1-108 [19842]
    138. 1kcr
      part of anti-hepatitis B Fab pc283; complexed with ps1 peptide
      1. region l:1-106 [72305]
    139. 1r3k
      part of Fab against potassium channel KcsA
      complexed with dga, tl; mutant
      1. region a:1-107 [96933]
    140. 1ncc
      part of Fab NC41
      complexed with ca, man, nag; mutant
      1. region l:1-108 [19986]
    141. 1igc
      part of Fab MoPC21
      1. region l:1-108 [20046]
    142. 1fai
      part of Fab R19.9
      1. region l:1-108 [19844]
    143. 1igt
      part of intact IgG2a antibody Mab231
      complexed with fuc, gal, man, nag
      1. region a:1-108 [19764]
      2. region c:1-108 [19766]
    144. 1uwe
      part of catalytic Fab 14d9
      1. region l:1-107 [100105]
      2. region u:1-107 [100107]
      3. region x:1-107 [100111]
    145. 1hi6
      part of anti-gp120 (HIV-1) Fab CB 4-1
      complexed with nh2
      1. region a:1-107 [20336]
    146. 1axs
      part of humanized oxy-cope catalytic Fab az-28
      complexed with cd, hop
      1. region l:1-107 [20198]
      2. region a:1-107 [20200]
    147. 1kyo
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with fes, hem, m3l, sma
      1. chain k [73263]
      2. chain v [73278]
    148. 1hh6
      part of anti-gp120 (HIV-1) Fab CB 4-1
      1. region a:1-107 [20342]
    149. 1uwg
      part of catalytic Fab 14d9
      complexed with kha, po4
      1. region l:1-107 [100117]
      2. region x:1-107 [100119]
    150. 1ghf
      part of Fab GH1002
      1. region l:1-107 [20108]
    151. 1jnl
      part of anti-estradiol Fab 17E12E5
      1. region l:1-107 [66958]
    152. 1bog
      part of anti-gp120 (HIV-1) Fab CB 4-1
      1. region a:1-107 [20334]
    153. 1bbj
      part of humanized Fab B72.3
      1. region l:1-109 [19784]
    154. 1bbj
      duplicate of 1BBJ L:1-109
      1. region a:1-109 [118418]
    155. 1d5b
      part of humanized oxy-cope catalytic Fab az-28
      1. region l:1-107 [20202]
      2. region a:1-107 [20204]
    156. 1jrh
      part of Fab A6
      mutant
      1. region l:1-107 [20222]
    157. 1r0a
      complexed with 2da, glc, gol, mg
      1. region l:1-107 [104681]
    158. 1hh9
      part of anti-gp120 (HIV-1) Fab CB 4-1
      complexed with nh2
      1. region a:1-107 [20346]
    159. 1kb5
      part of Fab Desire-1
      1. region l:1-108 [20228]
    160. 1fbi
      part of Fab F9.13.7
      1. region l:1-107 [20024]
      2. region p:1-107 [20026]
    161. 1nma
      part of Fab NC10; only Fv coordinates are included
      complexed with man, nag; mutant
      1. chain l [20064]
    162. 1jnn
      part of anti-estradiol Fab 17E12E5
      complexed with est
      1. region l:1-107 [66962]
    163. 1iai
      part of Fab 730.1.4
      1. region l:1-108 [20072]
    164. 1cft
      part of anti-gp120 (HIV-1) Fab CB 4-1
      1. region a:1-107 [20344]
    165. 1cfs
      part of anti-gp120 (HIV-1) Fab CB 4-1
      1. region a:1-107 [20340]
    166. 1cfq
      part of anti-gp120 (HIV-1) Fab CB 4-1
      1. region a:1-107 [20338]
    167. 1qle
      part of Fv against Paracoccus denitrificans cytochrome c oxidase
      1. chain l [20208]
    168. 1cfn
      part of anti-gp120 (HIV-1) Fab CB 4-1
      1. region a:1-107 [20348]
    169. 1fsk
      part of anti-bet v1 Fab BV16
      1. region b:1-107 [20466]
      2. region e:1-107 [20468]
      3. region h:1-107 [20470]
      4. region k:1-107 [20472]
    170. 1ahw
      part of anti-human tissue factor Fab 5G9
      1. region a:1-108 [20218]
      2. region d:1-108 [20220]
    171. 1igy
      part of intact IgG1 antibody Mab61.1.3
      complexed with fuc, gal, man, nag
      1. region a:2-107 [19768]
      2. region c:2-107 [19770]
    172. 1kno
      part of Fab CNJ206
      complexed with pnp, zn
      1. region a:1-108 [20008]
      2. region c:1-108 [20010]
      3. region e:1-108 [20012]
    173. 1t03
      part of Fab 28 against HIV-1 RT
      complexed with mg, mrg, tfo; mutant
      1. region l:1-107 [99058]
    174. 2hmi
      part of Fab 28 against HIV-1 RT
      protein/protein/DNA complex; mutant
      1. region c:1-107 [20274]
    175. 1n6q
      part of Fab 28 against HIV-1 RT
      complexed with atm, mg, mrg; mutant
      1. region l:1-107 [80209]
    176. 1n5y
      part of Fab 28 against HIV-1 RT
      complexed with atm, mg, mrg; mutant
      1. region l:1-107 [80062]
    177. 3hfm
      part of Fab HyHEL-10
      1. region l:1-108 [19976]
    178. 1hys
      part of Fab 28 against HIV-1 RT
      mutant
      1. region c:1-107 [61420]
    179. 1qfw
      part of anti-[gonadotropin beta subunit] Fv
      complexed with nag
      1. chain m [20436]
    180. 1r24
      part of Fab R24 from murine ascites
      1. region a:1-107 [20404]
      2. region c:1-107 [20406]
    181. 1j5o
      part of Fab 28 against HIV-1 RT
      mutant
      1. region l:1-107 [71573]
    182. 2dtg
      mutant
      1. region d:1-107 [145099]
    183. 1ngz
      part of metal chelatase catalytic Fab 7G12; chimeric germline antibody
      1. region a:1-107 [80500]
    184. 1ngx
      part of metal chelatase catalytic Fab 7G12; chimeric germline antibody
      complexed with jef
      1. region a:1-107 [85702]
      2. region l:1-107 [85708]
    185. 1ngy
      part of metal chelatase catalytic Fab 7G12; chimeric mature antibody
      1. region a:1-107 [80496]
    186. 2hh0
      chimera with human C domain
      mutant
      1. region l:2-149 [136464]
    187. 2gfb
      part of Fab CNJ206; H-chains in this entry seem to be mistraced in VH region
      1. region a:1-108 [19992]
      2. region c:1-108 [19994]
      3. region e:1-108 [19996]
      4. region g:1-108 [19998]
      5. region i:1-108 [20000]
      6. region k:1-108 [20002]
      7. region m:1-108 [20004]
      8. region o:1-108 [20006]
    188. 1ngw
      part of metal chelatase catalytic Fab 7G12; chimeric affinity matured antibody
      complexed with mmp
      1. region a:1-107 [80488]
      2. region l:1-107 [80494]
    189. 1b4j
      part of a chimeric anti-gamma-interferon Fab
      1. region l:1-107 [20308]
  13. Rat (Rattus norvegicus) [TaxId: 10116] [88532] (11)
    1. 1lk3
      part of anti-IL-10 Fab 9D7
      1. region l:1-106 [73956]
      2. region m:1-106 [73958]
    2. 1ce1
      part of humanized therapeutic antibody CAMPATH-1H
      1. region l:1-107 [20318]
    3. 1bfo
      part of therapeutic monoclonal antibody CAMPATH-1G
      1. region a:1-107 [20310]
      2. region c:1-107 [20312]
      3. region e:1-107 [20314]
      4. region g:1-107 [20316]
    4. 1c5d
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
      1. region l:1-106 [20412]
      2. region a:1-106 [20414]
    5. 2arj
      1. region a:1-107 [144829]
    6. 2arj
      automatically matched to 2ARJ A:1-107
      1. region l:1-107 [144835]
    7. 1za3
      automatically matched to d1c5da1
      1. region a:1-106 [124787]
    8. 1za3
      automatically matched to d1c5da1
      1. region l:1-106 [124793]
    9. 1bey
      part of antibody to CAMPATH-1H humanized Fab
      1. region l:1-107 [20320]
    10. 1fn4
      part of Fab 198 against acetylcholine receptor
      1. region a:1-107 [59884]
      2. region c:1-107 [59888]
    11. 1f3r
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
      mutant
      1. region b:139-257 [20417]
  14. Engineered (including hybrid species) [88533] (53)
    SQ NA # humanized antidoby; bactericidal Fab-h6831 ! SQ NA # Humanized antibody ! SQ NA # humanized antibody ! SQ NA # engineered antibody
    1. 1l7i
      part of humanized anti-ERBb2 Fab 2C4
      complexed with so4
      1. region l:1-107 [73658]
    2. 1jpt
      part of humanized Fab D3H44 against human tissue factor
      1. region l:1-107 [67053]
    3. 2imn
      VL domain only of humanized antibody MCPC603
      complexed with ace, so4; mutant
      1. chain a [19856]
    4. 1jps
      part of humanized Fab D3H44 against human tissue factor
      1. region l:1-107 [67047]
    5. 1t3f
      1. region a:1-108 [112228]
    6. 1fgv
      part of humanized Fv H52
      1. chain l [19852]
    7. 1op3
      part of engineered Fab 2G12
      complexed with box, man
      1. region k:2-107 [87210]
      2. region l:2-107 [87212]
    8. 1tjg
      complexed with egl, ioh, ycm
      1. region l:1-107 [112448]
    9. 1tjh
      complexed with ace, egl, ioh, nh2, ycm
      1. region l:1-107 [112452]
    10. 1tji
      complexed with egl, ioh, nh2, ycm
      1. region l:1-107 [112456]
    11. 2f5b
      part of humanized HIV-1 neutralizing Fab 2F5
      1. region l:1-107 [88508]
    12. 1gpo
      complexed with so4
      1. region l:1-112 [20224]
      2. region m:1-112 [20226]
    13. 1u8i
      1. region a:1-107 [113132]
    14. 2f5a
      part of humanized HIV-1 neutralizing Fab 2F5
      1. region l:1-107 [88504]
    15. 1u8h
      1. region a:1-107 [113128]
    16. 1u8k
      1. region a:1-107 [113140]
    17. 1ivl
      VL domain of synthetic antibody M29B; "reversed" dimerisation mode
      complexed with ipa
      1. chain a [20516]
      2. chain b [20517]
    18. 1fvc
      part of humanized Fv 4D5, herceptin
      1. chain a [19862]
      2. chain c [19864]
    19. 1u95
      1. region a:1-107 [113228]
    20. 1u8j
      1. region a:1-107 [113136]
    21. 1om3
      part of engineered Fab 2G12
      1. region l:2-107 [87063]
      2. region m:2-107 [87065]
    22. 1ad0
      part of humanized Fab A5B7
      1. region a:1-107 [20124]
      2. region c:1-107 [20126]
    23. 1jv5
      part of an anti-blood group A Fv
      1. chain a [67344]
    24. 1u8q
      1. region a:1-107 [113164]
    25. 1u91
      1. region a:1-107 [113216]
    26. 1u92
      1. region a:1-107 [113220]
    27. 1u8m
      1. region a:1-107 [113148]
    28. 1u8n
      1. region a:1-107 [113152]
    29. 1pg7
      part of humanized Fab D3H44 against human tissue factor
      1. region l:1-107 [94678]
      2. region m:1-107 [94680]
    30. 1fvd
      part of humanized Fab 4D5, herceptin
      1. region a:1-107 [19866]
      2. region c:1-107 [19868]
    31. 1u93
      1. region a:1-107 [113224]
    32. 1u8l
      1. region a:1-107 [113144]
    33. 1ad9
      part of humanized Fab CTM01
      complexed with so4
      1. region l:1-107 [20212]
      2. region a:1-107 [20214]
    34. 1tzh
      1. region a:1-107 [107477]
      2. region l:1-107 [107483]
    35. 1fve
      part of humanized Fab 4D5, herceptin
      1. region a:1-107 [19870]
      2. region c:1-107 [19872]
    36. 1n8z
      part of humanized Fab 4D5, herceptin
      complexed with nag, so4
      1. region a:1-107 [80318]
    37. 1mhp
      part of humanized anti-alpha1 integrin I-domain Fab
      complexed with mn; mutant
      1. region l:2-106 [84969]
    38. 1mhp
      part of humanized anti-alpha1 integrin I-domain Fab; only V domain is ordered
      complexed with mn; mutant
      1. chain y [84972]
    39. 1u8o
      1. region a:1-107 [113156]
    40. 1t04
      1. region a:1-108 [112182]
      2. region c:1-108 [112186]
    41. 1u8p
      1. region a:1-107 [113160]
    42. 1b2w
      part of a humanized anti-gamma-interferon Fab
      1. region l:1-107 [20306]
    43. 2fgw
      part of humanized Fab H52
      1. region l:1-108 [19854]
    44. 1bvk
      part of humanized anti-lysozyme Fv HuLys11
      1. chain a [20278]
      2. chain d [20280]
    45. 1it9
      part of humanized anti-human Fas Fab HFE7A
      1. region l:1-111 [76785]
    46. 1tzi
      1. region a:1-107 [107487]
    47. 1bvl
      part of humanized anti-lysozyme Fv HuLys11
      1. chain b [20283]
      2. chain d [20285]
    48. 1i9r
      part of humanized Fab 5C8 against C40 ligand
      complexed with zn
      1. region l:1-111 [71155]
      2. region m:1-111 [71157]
      3. region y:1-111 [71161]
    49. 1op5
      part of engineered Fab 2G12
      complexed with man, nag
      1. region k:2-107 [87218]
      2. region l:2-107 [87220]
    50. 1s78
      part of anti-ERBb2 Fab Pertuzumab
      complexed with man, nag
      1. region c:1-107 [98624]
      2. region e:1-107 [98628]
    51. 1s3k
      MQ NA P01857 # artificial chimera
      complexed with fuc, gal, gol, nag
      1. region h:1-119 [105237]
    52. 1uj3
      MQ NA P01834 # artificial chimera
      1. region a:1-107 [107888]
    53. 1rjl
      MQ NA P01837 # artificial chimera
      1. region a:1-107 [111821]
  15. synthetic construct [158859] (1)
    1. 2hwz
      automatically matched to d1dqdl1
      1. region l:4-106a [147429]
  16. Escherichia coli [TaxId: 562] [158860] (8)
    1. 2v7n
      automatically matched to d1rhha1
      1. region a:1-148 [152724]
    2. 2v7n
      automatically matched to d1rhha1
      1. region c:1-148 [152726]
    3. 2v7n
      automatically matched to d1rhha1
      1. region e:1-148 [152728]
    4. 2v7n
      automatically matched to d1rhha1
      1. region g:1-148 [152730]
    5. 3det
      automatically matched to d1dqdl1
      mutant
      1. region d:1-105 [157596]
    6. 3det
      automatically matched to d1dqdl1
      mutant
      1. region f:1-105 [157598]
    7. 2r9h
      automatically matched to d1dqdl1
      complexed with cl; mutant
      1. region d:1-105 [151784]
    8. 2r9h
      automatically matched to d1dqdl1
      complexed with cl; mutant
      1. region f:1-105 [151786]
2. Immunoglobulin light chain lambda variable domain, VL-lambda [88534]
  VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
  1. Human (Homo sapiens), cluster 1 [TaxId: 9606] [88535] (4)
    SQ NA # Bence-Jones protein JTO ! SQ P06317 # Ig lambda chain V-VI region SUT
    1. 1cd0
      VL dimer of Bence-Jones protein JTO
      1. chain a [20559]
      2. chain b [20560]
    2. 1pew
      complexed with cd; mutant
      1. chain a [104135]
      2. chain b [104136]
    3. 1pw3
      complexed with cd; mutant
      1. chain a [104335]
      2. chain b [104336]
    4. 2cd0
      VL dimer of Bence-Jones protein WIL
      1. chain a [20561]
      2. chain b [20562]
  2. Human (Homo sapiens), cluster 2 [TaxId: 9606] [88536] (11)
    1. 2rhe
      VL of Bence-Jones protein RHE
      1. chain a [20523]
    2. 1rzf
      part of anti HIV-1 gp120-reactive Fab E51
      complexed with gol, ioh
      1. region l:2-108 [98152]
    3. 2fb4
      part of Fab KOL
      1. region l:1-109 [19846]
    4. 1nl0
      part of Fab 10c12 against factor IX Gla domain
      complexed with ca, so4
      1. region l:1-108 [91947]
    5. 1bjm
      VL dimer of Bence-Jones protein LOC
      1. region a:1-111 [20524]
      2. region b:1-111 [20525]
    6. 1q1j
      part of anti HIV-1 Fab 447-52d
      1. region l:1-108 [95585]
      2. region m:1-108 [95587]
    7. 3bjl
      VL dimer of Bence-Jones protein LOC
      1. region a:1-111 [20526]
      2. region b:1-111 [20527]
    8. 4bjl
      VL dimer of Bence-Jones protein LOC
      1. region a:2-111 [20528]
      2. region b:2-111 [20529]
    9. 2ig2
      part of antibody KOL; intact protein but only Fab's can be seen in the crystal structure
      1. region l:1-109 [19848]
    10. 2j6e
      complexed with act, bma, cac, cd, ful, gal, man, mpd, nag, ndg, zn
      1. region l:1-108 [145669]
    11. 2j6e
      automatically matched to 2J6E L:1-108
      complexed with act, bma, cac, cd, ful, gal, man, mpd, nag, ndg, zn
      1. region m:1-108 [145671]
  3. Human (Homo sapiens), cluster 3.1 [TaxId: 9606] [88537] (3)
    1. 1aqk
      part of Fab B7-15A2
      1. region l:1-111 [20192]
    2. 3dgg
      automatically matched to d1aqkl1
      complexed with mg
      1. region a:3-107 [157714]
    3. 3dgg
      automatically matched to d1aqkl1
      complexed with mg
      1. region c:3-107 [157717]
  4. Human (Homo sapiens), cluster 3.2 [TaxId: 9606] [88538] (1)
    1. 7fab
      part of Fab NEW
      1. region l:1-103 [19776]
  5. Human (Homo sapiens), cluster 4 [TaxId: 9606] [88539] (23)
    1. 1lgv
      part of amyloidogenic protein BUR
      complexed with pca
      1. region a:1-112 [84608]
      2. region b:1-112 [84610]
    2. 1jvk
      part of amyloidogenic protein BUR
      complexed with pca
      1. region a:1-112 [71897]
      2. region b:1-112 [71899]
    3. 1lhz
      part of amyloidogenic protein BUR
      complexed with pca
      1. region a:1-112 [84612]
      2. region b:1-112 [84614]
    4. 1dcl
      part of the antibody MCG light chain dimer
      1. region a:1-111 [20565]
      2. region b:1-111 [20566]
    5. 2mcg
      part of the antibody MCG light chain dimer
      1. region 1:1-111 [20567]
      2. region 2:1-111 [20568]
    6. 1mck
      part of the antibody MCG light chain dimer
      complexed with nh2
      1. region a:1-111 [20573]
      2. region b:1-111 [20574]
    7. 1mcd
      part of the antibody MCG light chain dimer
      complexed with bal, nh2
      1. region a:1-111 [20571]
      2. region b:1-111 [20572]
    8. 1mcb
      part of the antibody MCG light chain dimer
      1. region a:1-111 [20575]
      2. region b:1-111 [20576]
    9. 3mcg
      part of the antibody MCG light chain dimer
      1. region 1:1-111 [20569]
      2. region 2:1-111 [20570]
    10. 1mcq
      part of the antibody MCG light chain dimer
      complexed with nh2
      1. region a:1-111 [20577]
      2. region b:1-111 [20578]
    11. 1mcf
      part of the antibody MCG light chain dimer
      complexed with bal
      1. region a:1-111 [20579]
      2. region b:1-111 [20580]
    12. 1mci
      part of the antibody MCG light chain dimer
      1. region a:1-111 [20581]
      2. region b:1-111 [20582]
    13. 1mcc
      part of the antibody MCG light chain dimer
      complexed with nh2
      1. region a:1-111 [20583]
      2. region b:1-111 [20584]
    14. 1mcs
      part of the antibody MCG light chain dimer
      1. region a:1-111 [20585]
      2. region b:1-111 [20586]
    15. 1mce
      part of the antibody MCG light chain dimer
      complexed with bal
      1. region a:1-111 [20587]
      2. region b:1-111 [20588]
    16. 1mcl
      part of the antibody MCG light chain dimer
      1. region a:1-111 [20589]
      2. region b:1-111 [20590]
    17. 1mcn
      part of the antibody MCG light chain dimer
      complexed with nh2
      1. region a:1-111 [20591]
      2. region b:1-111 [20592]
    18. 1mcr
      part of the antibody MCG light chain dimer
      1. region a:1-111 [20593]
      2. region b:1-111 [20594]
    19. 1mcj
      part of the antibody MCG light chain dimer
      complexed with nh2
      1. region a:1-111 [20595]
      2. region b:1-111 [20596]
    20. 1a8j
      part of the antibody MCG light chain dimer
      complexed with pme
      1. region l:1-111 [20597]
      2. region h:1-111 [20598]
    21. 1mch
      part of the antibody MCG light chain dimer
      complexed with bal
      1. region a:1-111 [20599]
      2. region b:1-111 [20600]
    22. 1mco
      part of intact antibody MCG
      complexed with fuc, gal, man, nag, sia
      1. region l:1-111 [20563]
    23. 1mcw
      part of heterologous L chain dimer MCG-WEIR
      1. region m:1-111 [20601]
      2. region w:1-111 [20602]
  6. Human (Homo sapiens), cluster 5 [TaxId: 9606] [88540] (9)
    SQ Q8N355 20-230 # 94% sequence identity; natural chimera: antibody light chain (Fab HYB3)
    1. 8fab
      part of Fab HIL
      1. region a:3-105 [19772]
      2. region c:3-105 [19774]
    2. 1w72
      complexed with gol
      1. region l:1-107 [114303]
      2. region m:1-107 [114305]
    3. 2dd8
      complexed with nag, po4
      1. region l:3-108 [145075]
    4. 2g75
      automatically matched to 2DD8 L:3-108
      1. region b:3-108 [147088]
    5. 2g75
      automatically matched to 2DD8 L:3-108
      1. region d:3-108 [147092]
    6. 1adq
      part of IgM rheumatoid factor Fab
      1. region l:2-107 [20272]
    7. 1lil
      part of Bence-Jones protein CLE
      1. region a:2-107 [20557]
      2. region b:2-107 [20558]
    8. 1zvo
      automatically matched to d1adql1
      1. region a:3-108 [125710]
    9. 1zvo
      automatically matched to d1adql1
      1. region b:3-108 [125712]
  7. Mouse (Mus musculus) [TaxId: 10090] [88541] (35)
    1. 1mfa
      part of Fv SE155-4
      complexed with abe, gal, mma
      1. region l:1-111 [19888]
    2. 1q0x
      part of anti-morphine Fab 9b1
      complexed with pg4, so4
      1. region l:1-107 [95519]
    3. 1a6w
      part of Fv B1-8
      complexed with nip
      1. chain l [20252]
    4. 1q0y
      part of anti-morphine Fab 9b1
      complexed with moi, so4
      1. region l:1-107 [95523]
    5. 1mfb
      part of Fab SE155-4
      complexed with abe, gal, man, ram
      1. region l:1-111 [19890]
    6. 1mfc
      part of Fab SE155-4
      complexed with abe, gal, man, ram
      1. region l:1-111 [19894]
    7. 1a6u
      part of Fv B1-8
      1. chain l [20254]
    8. 1mfe
      part of Fab SE155-4
      complexed with abe, gal, man
      1. region l:1-111 [19892]
    9. 1sm3
      part of tumor-specific Fab SM3 against epithelial mucin Muc1
      complexed with cd, cl
      1. region l:3-107 [20368]
    10. 1mfd
      part of Fab SE155-4
      complexed with abe, gal, mma
      1. region l:1-111 [19896]
    11. 1nc2
      part of Fab 2d12.5
      complexed with cl, doe, nag, yt3
      1. region a:1-110 [91781]
      2. region c:1-110 [91785]
    12. 1nc4
      part of Fab 2d12.5
      complexed with cl, dof, gd3, nag
      1. region a:1-110 [91789]
      2. region c:1-110 [91793]
    13. 1f4x
      part of anti-carbohydrate Fab S-20-4
      complexed with mgs
      1. region l:1-110 [20450]
    14. 1f4w
      part of anti-carbohydrate Fab S-20-4
      1. region l:1-110 [20452]
    15. 1p4b
      part of anti-GCN4 peptide scFv
      1. chain l [94099]
    16. 1gig
      part of Fab HC19
      1. region l:1-110 [19910]
    17. 1pg7
      part of Fab 6A6
      1. region w:1-108 [94682]
      2. region y:1-108 [94686]
    18. 1ind
      part of Fab Cha255
      complexed with eot, in
      1. region l:2-109 [19838]
    19. 1a6v
      part of Fv B1-8
      complexed with npc
      1. chain l [20256]
      2. chain m [20258]
      3. chain n [20260]
    20. 1ngp
      part of Fab N1G9
      complexed with npa, so4
      1. region l:1-109 [20090]
    21. 1etz
      part of anti-sweetener Fab NC10.14
      complexed with gas
      1. region l:1-110 [20478]
      2. region a:1-110 [20480]
    22. 1ngq
      part of Fab N1G9
      complexed with so4
      1. region l:1-109 [20092]
    23. 1nj9
      part of cocaine hydrolytic Fab 15a10
      complexed with na
      1. region a:1-108 [91897]
      2. region l:1-108 [91903]
    24. 1jnh
      part of anti-estradiol Fab 10G6D6
      complexed with eco
      1. region a:1-108 [66939]
      2. region c:1-108 [66943]
      3. region e:1-108 [66947]
      4. region g:1-108 [66951]
    25. 1p4i
      part of anti-GCN4 peptide scFv
      mutant
      1. chain l [94105]
    26. 1dl7
      part of Fv M3C65; conflict: annotated in PDB as human protein
      complexed with nch
      1. chain l [20498]
    27. 1ine
      part of Fab Cha255
      complexed with eot, fe
      1. region l:2-109 [19840]
    28. 1jn6
      part of anti-estradiol Fab 10G6D6
      1. region a:1-108 [66923]
    29. 2vit
      part of Fab HC19
      complexed with zn; mutant
      1. region a:1-110 [19914]
    30. 2vis
      part of Fab HC19
      complexed with nag, zn; mutant
      1. region a:1-110 [19912]
    31. 2vir
      part of Fab HC19
      complexed with zn
      1. region a:1-110 [19916]
    32. 1f4y
      part of anti-carbohydrate Fab S-20-4
      complexed with mgu
      1. region l:1-110 [20454]
    33. 1yuh
      part of an anti-nitrophenol Fab
      complexed with np
      1. region l:2-109 [20096]
      2. region a:2-109 [20098]
    34. 3c6l
      automatically matched to d1lila1
      complexed with ca
      1. region a:7-109 [155977]
    35. 3c6l
      automatically matched to d1lila1
      complexed with ca
      1. region e:7-109 [155983]
  8. Rat (Rattus norvegicus) [TaxId: 10116] [101504] (8)
    1. 1oaq
      part of IgE Fv spe-7
      1. chain l [92708]
    2. 1oau
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
      1. chain l [92721]
      2. chain m [92722]
      3. chain n [92723]
      4. chain o [92724]
    3. 1oar
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
      1. chain l [92713]
      2. chain m [92714]
      3. chain n [92715]
      4. chain o [92716]
    4. 1oax
      part of IgE Fv spe-7
      complexed with anq
      1. chain l [92729]
      2. chain m [92730]
      3. chain n [92731]
      4. chain o [92732]
    5. 2bjm
      automatically matched to d1oaql_
      complexed with anf
      1. region l:1-109 [128625]
    6. 1oay
      part of IgE Fv spe-7
      complexed with fur
      1. chain l [92737]
      2. chain m [92738]
      3. chain n [92739]
      4. chain o [92740]
    7. 1ocw
      part of IgE Fv spe-7
      1. chain l [92780]
    8. 1oaz
      part of IgE Fv spe-7
      1. chain l [92745]
      2. chain n [92746]
  9. Hamster (Cricetulus griseus) [TaxId: 10029] [88542] (1)
    1. 1nfd
      part of Fab H57
      complexed with nag
      1. region e:2-107 [20186]
      2. region g:2-107 [20188]
3. Immunoglobulin heavy chain variable domain, VH [88543]
  VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  1. Human (Homo sapiens), cluster 1 [TaxId: 9606] [88544] (47)
    1. 1rzf
      part of anti HIV-1 gp120-reactive Fab E51
      complexed with gol, ioh
      1. region h:2-113 [98150]
    2. 2fx7
      automatically matched to d1hzhh1
      complexed with gol; mutant
      1. region h:1-113 [134276]
    3. 1n0x
      part of an anti HIV-1 Fab
      complexed with cxs, gol, k, orn, so4
      1. region h:1-113 [91528]
      2. region k:1-113 [91530]
    4. 2nxy
      automatically matched to d1rz8b1
      complexed with hez, nag, trs; mutant
      1. region d:3001-3128 [138749]
    5. 1rz7
      part of anti HIV-1 gp120-reactive Fab 48D
      complexed with gol
      1. region h:1-113 [98133]
    6. 2ny2
      automatically matched to d1rz8b1
      complexed with edo, hez, nag, suc; mutant
      1. region d:3001-3128 [138774]
    7. 1iqd
      part of intact IgG B12 antibody
      mutant
      1. region b:1-114 [62646]
    8. 1rzg
      part of anti HIV-1 gp120-reactive Fab 412D
      complexed with suc
      1. region a:1-113 [98154]
      2. region c:2-113 [98158]
    9. 2ny3
      automatically matched to d1rz8b1
      complexed with nag, suc; mutant
      1. region d:3001-3128 [138780]
    10. 2ny4
      automatically matched to d1rz8b1
      complexed with hez, nag, suc; mutant
      1. region d:3001-3128 [138786]
    11. 1rhh
      part of HIV-1 neutralizing Fab x5
      1. region b:3-113 [97475]
      2. region d:4-113 [97479]
    12. 2ny1
      automatically matched to d1rz8b1
      complexed with nag, suc; mutant
      1. region d:3001-3128 [138768]
    13. 2nxz
      automatically matched to d1rz8b1
      complexed with edo, hez, ipa, nag, suc; mutant
      1. region d:3001-3128 [138755]
    14. 1vge
      part of humanized Fab TR1.9
      1. region h:1-122 [20095]
    15. 2fx9
      automatically matched to d1hzhh1
      complexed with orq
      1. region h:1-113 [134296]
    16. 2fx9
      automatically matched to d1hzhh1
      complexed with orq
      1. region i:1-113 [134298]
    17. 1tzg
      automatically matched to d1hzhh1
      complexed with gol
      1. region h:1-113 [119396]
    18. 1tzg
      automatically matched to d1hzhh1
      complexed with gol
      1. region i:1-113 [119398]
    19. 2ny0
      automatically matched to d1rz8b1
      complexed with hez, nag; mutant
      1. region d:3001-3128 [138762]
    20. 2fx8
      automatically matched to d1hzhh1
      mutant
      1. region h:1-113 [134280]
    21. 2fx8
      automatically matched to d1hzhh1
      mutant
      1. region i:1-113 [134282]
    22. 2fx8
      automatically matched to d1hzhh1
      mutant
      1. region j:1-113 [134284]
    23. 2fx8
      automatically matched to d1hzhh1
      mutant
      1. region k:1-113 [134286]
    24. 1yym
      automatically matched to d1rz8b1
      complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
      1. region h:1-113 [124233]
    25. 1yym
      automatically matched to d1rz8b1
      complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
      1. region r:1001-1113 [124240]
    26. 2i5y
      automatically matched to d1rz8b1
      complexed with bif, mpt, nag, ndg, vlm
      1. region h:1-113 [137072]
    27. 2i5y
      automatically matched to d1rz8b1
      complexed with bif, mpt, nag, ndg, vlm
      1. region r:1-113 [137079]
    28. 2ny7
      automatically matched to d1hzhh1
      complexed with nag; mutant
      1. region h:1-113 [138800]
    29. 2dd8
      complexed with nag, po4
      1. region h:2-113 [145073]
    30. 2g75
      automatically matched to 2DD8 H:2-113
      1. region a:2-113 [147086]
    31. 2g75
      automatically matched to 2DD8 H:2-113
      1. region c:2-113 [147090]
    32. 1rz8
      part of anti HIV-1 gp120-reactive Fab 17B
      1. region b:1-113 [98139]
      2. region d:1-113 [98143]
    33. 2i60
      automatically matched to d1rz8b1
      complexed with ipa, mpt, nag, ndg, vlm
      1. region h:2-113 [137082]
    34. 2i60
      automatically matched to d1rz8b1
      complexed with ipa, mpt, nag, ndg, vlm
      1. region r:1-113 [137089]
    35. 2ny5
      automatically matched to d1rz8b1
      complexed with nag, suc; mutant
      1. region h:3001-3128 [138790]
    36. 1g9m
      part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
      complexed with fuc, ioh, nag; mutant
      1. region h:1-129 [20263]
    37. 1rzj
      part of anti HIV-1 gp120-reactive Fab 17B
      complexed with fuc, ioh, nag; mutant
      1. region h:1-113 [98201]
    38. 1yyl
      automatically matched to d1rz8b1
      complexed with bif, mpt, nag, ndg, vlm; mutant
      1. region h:1-113 [124223]
    39. 1yyl
      automatically matched to d1rz8b1
      complexed with bif, mpt, nag, ndg, vlm; mutant
      1. region r:1001-1113 [124230]
    40. 1gc1
      part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
      complexed with fuc, nag; mutant
      1. region h:1-129 [20265]
    41. 1hzh
      part of intact IgG B12 antibody
      complexed with fuc, gal, man, nag
      1. region h:1-113 [61437]
      2. region k:1-113 [61441]
    42. 2ny6
      automatically matched to d1rz8b1
      complexed with nag, suc; mutant
      1. region d:3001-3128 [138798]
    43. 1rzk
      part of anti HIV-1 gp120-reactive Fab 17B
      complexed with nag; mutant
      1. region h:1-113 [98208]
    44. 1g9n
      part of HIV-1 neutralizing Fab 17B; binds to the CD4-induced state of gp120
      complexed with nag; mutant
      1. region h:1-129 [20267]
    45. 2qad
      automatically matched to d1rzga1
      complexed with edo, mla, nag
      1. region d:1-113 [150205]
    46. 2qad
      automatically matched to d1rzga1
      complexed with edo, mla, nag
      1. region h:1-113 [150209]
    47. 1rzi
      part of anti HIV-1 gp120-reactive Fab 47E
      1. region b:1-113 [98168]
      2. region d:1-113 [98172]
      3. region f:1-113 [98176]
      4. region h:1-113 [98180]
      5. region j:1-113 [98184]
      6. region l:1-113 [98188]
      7. region n:1-113 [98192]
      8. region p:1-113 [98196]
  2. Human (Homo sapiens), cluster 2.1 [TaxId: 9606] [88545] (3)
    1. 7fab
      part of Fab NEW
      1. region h:1-116 [19777]
    2. 1dn0
      part of Fab Kau cold agglutinin IgM
      1. region b:1-120 [19831]
      2. region d:1-120 [19833]
    3. 1qlr
      part of Fab Kau cold agglutinin IgM
      complexed with fuc, nag
      1. region b:1-120 [19835]
      2. region d:1-120 [19837]
  3. Human (Homo sapiens), cluster 2.2 [TaxId: 9606] [88546] (3)
    1. 2j6e
      complexed with act, bma, cac, cd, ful, gal, man, mpd, nag, ndg, zn
      1. region h:1-113 [145665]
    2. 2j6e
      automatically matched to 2J6E H:1-113
      complexed with act, bma, cac, cd, ful, gal, man, mpd, nag, ndg, zn
      1. region i:1-113 [145667]
    3. 1mco
      part of intact antibody MCG
      complexed with fuc, gal, man, nag, sia
      1. region h:1-117 [20564]
  4. Human (Homo sapiens), cluster 3 [TaxId: 9606] [88547] (66)
    SQ Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3)
    1. 8fab
      part of Fab HIL
      1. region b:1-121 [19773]
      2. region d:1-121 [19775]
    2. 1w72
      complexed with gol
      1. region h:1-113 [114299]
      2. region i:1-113 [114301]
    3. 2fb4
      part of Fab KOL
      1. region h:1-119 [19847]
    4. 2qqn
      automatically matched to d1aqkh1
      complexed with edo
      1. region h:1-113 [151224]
    5. 1aqk
      part of Fab B7-15A2
      1. region h:1-123 [20193]
    6. 1nl0
      part of Fab 10c12 against factor IX Gla domain
      complexed with ca, so4
      1. region h:1-113 [91945]
    7. 3c08
      automatically matched to d8fabb1
      complexed with so4
      1. region h:2-121 [155809]
    8. 1zls
      automatically matched to d1aqkh1
      complexed with man
      1. region h:1-112 [125255]
    9. 1zlv
      automatically matched to d1aqkh1
      complexed with man
      1. region h:1-112 [125262]
    10. 1zlv
      automatically matched to d1aqkh1
      complexed with man
      1. region m:1-112 [125264]
    11. 1y0l
      automatically matched to d1aqkh1
      complexed with cl, han
      1. region b:1-113 [122488]
    12. 1y0l
      automatically matched to d1aqkh1
      complexed with cl, han
      1. region d:1-113 [122492]
    13. 1y0l
      automatically matched to d1aqkh1
      complexed with cl, han
      1. region f:1-113 [122496]
    14. 1y0l
      automatically matched to d1aqkh1
      complexed with cl, han
      1. region h:1-113 [122498]
    15. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region b:1-113 [156583]
    16. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region d:1-113 [156587]
    17. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region f:1-113 [156591]
    18. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region h:1-113 [156595]
    19. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region i:1-113 [156597]
    20. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region k:1-113 [156601]
    21. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region n:1-113 [156607]
    22. 3cfk
      automatically matched to d1aqkh1
      complexed with b3p, cd, gol; mutant
      1. region p:1-113 [156611]
    23. 3cfj
      automatically matched to d1aqkh1
      complexed with gol, so4; mutant
      1. region b:1-113 [156567]
    24. 3cfj
      automatically matched to d1aqkh1
      complexed with gol, so4; mutant
      1. region d:1-113 [156571]
    25. 3cfj
      automatically matched to d1aqkh1
      complexed with gol, so4; mutant
      1. region f:1-113 [156575]
    26. 3cfj
      automatically matched to d1aqkh1
      complexed with gol, so4; mutant
      1. region h:1-113 [156577]
    27. 1dql
      part of IgM Fv MEZ
      1. chain h [19829]
    28. 2ghw
      complexed with cl
      1. region b:1-117 [145199]
    29. 2ghw
      automatically matched to 2GHW B:1-117
      complexed with cl
      1. region d:1-117 [145201]
    30. 1dee
      part of IgM RF 2A2
      1. region b:501-621 [20443]
      2. region d:1501-1621 [20445]
      3. region f:2501-2621 [20447]
    31. 1u6a
      automatically matched to d1aqkh1
      1. region h:2-113 [119564]
    32. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region c:1-121 [154774]
    33. 3dvg
      automatically matched to d1nl0h1
      mutant
      1. region b:2-120 [157890]
    34. 3dvn
      automatically matched to d1nl0h1
      mutant
      1. region b:2-120 [157896]
    35. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region f:1-121 [154778]
    36. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region h:1-121 [154780]
    37. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region j:1-121 [154784]
    38. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region n:1-121 [154788]
    39. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region q:1-121 [154792]
    40. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region t:1-121 [154796]
    41. 3b2u
      automatically matched to d1deeb1
      complexed with bma, man, nag, so4
      1. region w:1-121 [154800]
    42. 3dvn
      automatically matched to d1nl0h1
      mutant
      1. region h:2-120 [157898]
    43. 1igm
      part of IgM Fv POT
      1. chain h [19827]
    44. 1hez
      part of IgM RF 2A2
      complexed with imd
      1. region b:1-121 [60985]
      2. region d:1-121 [60989]
    45. 1dfb
      part of Fab 3D6
      1. region h:1-126 [19811]
    46. 1y18
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
      1. region b:1-113 [122523]
    47. 1y18
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
      1. region d:1-113 [122527]
    48. 1y18
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
      1. region f:1-113 [122531]
    49. 1y18
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
      1. region h:1-113 [122533]
    50. 2jb5
      automatically matched to d1nl0h1
      complexed with t5c
      1. region h:3-120 [147955]
    51. 2oqj
      automatically matched to d1aqkh1
      1. region b:1-112 [148984]
    52. 2oqj
      automatically matched to d1aqkh1
      1. region e:1-112 [148986]
    53. 2oqj
      automatically matched to d1aqkh1
      1. region h:1-112 [148988]
    54. 2oqj
      automatically matched to d1aqkh1
      1. region k:1-112 [148990]
    55. 3bky
      automatically matched to d1w72h1
      1. region h:1-122 [155372]
    56. 2jb6
      automatically matched to d1nl0h1
      complexed with t5c
      1. region b:3-120 [147957]
    57. 2jb6
      automatically matched to d1nl0h1
      complexed with t5c
      1. region h:3-120 [147959]
    58. 1zlw
      automatically matched to d1aqkh1
      complexed with bma, man
      1. region h:1-112 [125266]
    59. 1zlw
      automatically matched to d1aqkh1
      complexed with bma, man
      1. region m:1-112 [125268]
    60. 1adq
      part of IgM rheumatoid factor Fab
      1. region h:1-113 [20273]
    61. 2ig2
      part of antibody KOL; intact protein but only Fab's can be seen in the crystal structure
      1. region h:1-119 [19849]
    62. 1zlu
      automatically matched to d1aqkh1
      complexed with man
      1. region h:1-112 [125258]
    63. 1zlu
      automatically matched to d1aqkh1
      complexed with man
      1. region m:1-112 [125260]
    64. 3c09
      automatically matched to d8fabb1
      complexed with bma, man, nag
      1. region c:2-121 [155813]
    65. 3c09
      automatically matched to d8fabb1
      complexed with bma, man, nag
      1. region h:2-121 [155817]
    66. 3b2v
      automatically matched to d1deeb1
      complexed with bma, nag, ndg
      1. region h:1-121 [154802]
  5. Human (Homo sapiens), cluster 4 [TaxId: 9606] [101505] (4)
    1. 3c2a
      automatically matched to d1q1jh1
      1. region h:1-113 [155872]
    2. 3c2a
      automatically matched to d1q1jh1
      1. region i:1-113 [155874]
    3. 1q1j
      part of anti HIV-1 Fab 447-52d
      1. region h:1-113 [95581]
      2. region i:1-113 [95583]
    4. 2b4c
      automatically matched to d1q1jh1
      complexed with fuc, nag, ndg, so4, xyl; mutant
      1. region h:4-113 [127822]
  6. Mouse (Mus musculus), cluster 1 [TaxId: 10090] [88548] (51)
    SQ P01796 # ! HV27_MOUSE Ig heavy chain V-III region A4
    1. 1dlf
      part of anti-dansyl Fv
      complexed with so4
      1. chain h [20383]
    2. 1q9r
      part of Fab s25-2
      complexed with kda, kdo, mg, zn
      1. region b:1-111 [96307]
    3. 1q9q
      part of Fab s25-2
      complexed with kda, kdo, mg, zn
      1. region b:1-111 [96303]
    4. 2dlf
      part of anti-dansyl Fv
      1. chain h [20385]
    5. 1q9v
      part of Fab s25-2
      complexed with kdo, mg, zn
      1. region b:1-111 [96318]
    6. 1q72
      part of anti-cocaine Fab M82G2
      complexed with coc
      1. region h:1-113 [96014]
    7. 1qyg
      part of anti-cocaine Fab M82G2
      complexed with bcg
      1. region h:1-113 [96589]
    8. 1q9t
      part of Fab s25-2
      complexed with kda, kdo, mg, zn
      1. region b:1-111 [96312]
    9. 1pz5
      part of Fab Sya/J6
      1. region b:1-113 [95403]
    10. 1q9w
      part of Fab s45-18
      complexed with gp1, gp4, kdo, mg
      1. region b:1-111 [96322]
      2. region d:1-111 [96326]
    11. 1q9o
      part of Fab s45-18
      complexed with mg
      1. region b:1-111 [96294]
      2. region d:1-111 [96298]
    12. 1riu
      part of anti-cocaine Fab M82G2
      complexed with rbe
      1. region h:1-113 [97518]
    13. 1wz1
      automatically matched to d1dlfh_
      complexed with dns
      1. region h:1-120 [121476]
    14. 1kel
      part of Fab 28B4
      complexed with aah
      1. region h:1-115 [20113]
    15. 1rfd
      part of anti-cocaine Fab M82G2
      1. region h:1-113 [97372]
    16. 1riv
      part of anti-cocaine Fab M82G2
      complexed with obe
      1. region h:1-113 [97522]
    17. 1sbs
      part of anti-HCG Fab 3A2
      complexed with so4
      1. region h:1-123 [20367]
    18. 1sm3
      part of tumor-specific Fab SM3 against epithelial mucin Muc1
      complexed with cd, cl
      1. region h:1-113 [20369]
    19. 1q9k
      part of Fab s25-2
      complexed with mg
      1. region b:1-111 [96278]
    20. 1flr
      part of Fab 4-4-20
      complexed with flu
      1. region h:1-118 [19905]
    21. 1fl5
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4; mutant
      1. region h:1-113 [65019]
      2. region b:1-113 [65017]
    22. 1kem
      part of Fab 28B4
      1. region h:1-115 [20115]
    23. 2ck0
      part of anti-anti-idiotypic Fab against human angiotensin II, complex with a synthetic cyclic peptide
      1. region h:1-106 [100853]
    24. 1clo
      part of Fab A5B7
      1. region h:1-113 [20123]
    25. 1m7d
      part of Fab specific for Y lipopolysaccharide
      complexed with 1na, raa, rae
      1. region b:1-113 [84863]
    26. 2bmk
      automatically matched to 1WC7 B:1-113
      complexed with iod, pdd
      1. region b:1-113 [144992]
    27. 2bmk
      automatically matched to 1WC7 B:1-113
      complexed with iod, pdd
      1. region h:1-113 [144994]
    28. 1axt
      part of catalytic Fab 33F12 with an aldolase activity
      1. region h:1-113 [20305]
    29. 1t66
      complexed with flu
      1. region d:1-118 [106547]
      2. region h:1-118 [106549]
    30. 1q9l
      part of Fab s25-2
      complexed with mg, zn
      1. region b:1-111 [96282]
      2. region d:1-111 [96286]
    31. 1ck0
      part of anti-anti-idiotypic Fab against human angiotensin II, unliganded form
      1. region h:1-106 [90422]
    32. 1m7i
      part of Fab specific for Y lipopolysaccharide
      complexed with nag, raa, rao
      1. region b:1-113 [84867]
    33. 1wcb
      automatically matched to 1WC7 B:1-113
      complexed with iod, pe1
      1. region b:1-113 [144554]
    34. 1wcb
      automatically matched to 1WC7 B:1-113
      complexed with iod, pe1
      1. region h:1-113 [144556]
    35. 1fl6
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah; mutant
      1. region h:1-113 [65027]
      2. region b:1-113 [65025]
    36. 1nbv
      part of Fab BV04-01
      1. region h:1-122 [19899]
    37. 1mam
      part of Fab Yst9.1
      1. region h:1-119 [19887]
    38. 3ck0
      part of anti-anti-idiotypic Fab against human angiotensin II, complex with angiotensin II
      1. region h:1-106 [100865]
    39. 1v7m
      part of anti-trombopoetin Fab tn1
      1. region h:1-116 [100450]
      2. region i:1-116 [100452]
    40. 1m71
      part of Fab specific for Y lipopolysaccharide
      1. region b:1-113 [84853]
    41. 1wc7
      complexed with iod, pp3
      1. region b:1-113 [144550]
    42. 1wc7
      automatically matched to 1WC7 B:1-113
      complexed with iod, pp3
      1. region h:1-113 [144552]
    43. 1cbv
      part of Fab BV04-01
      1. region h:1-122 [19901]
    44. 1iai
      part of Fab 409.5.3
      1. region i:1-121 [20075]
    45. 2uud
      complexed with phx
      1. region h:1-113 [152181]
    46. 2uud
      complexed with phx
      1. region j:1-113 [152182]
    47. 1mcp
      part of Fab MCPC603
      complexed with so4
      1. region h:1-121 [19859]
    48. 2mcp
      part of Fab MCPC603
      complexed with pc
      1. region h:1-121 [19861]
    49. 4fab
      part of Fab 4-4-20
      complexed with fds, mpd
      1. region h:1-118 [19907]
    50. 1aif
      part of Fab 409.5.3
      1. region b:1-121 [20077]
      2. region h:1-121 [20079]
    51. 1v7n
      part of anti-trombopoetin Fab tn1
      mutant
      1. region h:1-116 [100460]
      2. region i:1-116 [100462]
      3. region j:1-116 [100464]
      4. region k:1-116 [100466]
  7. Mouse (Mus musculus), cluster 2.1 [TaxId: 10090] [88549] (14)
    SQ P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity
    1. 1jgu
      part of catalytic Fab 1D4
      complexed with hbc, oh
      1. region h:1-113 [66688]
    2. 1jgv
      part of catalytic Fab 1D4
      1. region h:1-113 [66692]
    3. 1l7t
      part of anti-testosterone Fab 77
      1. region h:1-118 [77799]
    4. 1ub5
      part of blue fluorescent Fab 19G2
      part of anti-testosterone Fab 77
      complexed with spb
      1. region h:1-116 [99147]
      2. region a:1-116 [99143]
    5. 1lo0
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
      1. region y:1-119 [74121]
      2. region h:1-119 [74115]
    6. 1lo2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
      1. region y:1-119 [74129]
      2. region h:1-119 [74123]
    7. 1i9j
      part of anti-testosterone Fab
      complexed with tes
      1. region h:1-118 [71144]
    8. 1lo3
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
      1. region y:1-119 [74137]
      2. region h:1-119 [74131]
    9. 1ub6
      part of blue fluorescent Fab 19G2
      1. region h:2-116 [99155]
      2. region a:2-116 [99151]
    10. 1fl3
      part of blue fluorescent Fab 19G2
      complexed with spb
      1. region h:2-116 [20484]
      2. region a:2-116 [20486]
    11. 1i9i
      part of anti-testosterone Fab
      1. region h:1-118 [71140]
    12. 1lo4
      part of retro Diels-Alder catalytic Fab 9D9
      1. region h:1-118 [74139]
    13. 1kfa
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
      1. region h:2-121 [77361]
      2. region i:3-121 [77363]
    14. 1vpo
      MQ P18527 P01863 # natural chimera; anti-testosterone antibody (Fab)
      complexed with tes
      1. region h:1-118 [113970]
  8. Mouse (Mus musculus), cluster 2.2 [TaxId: 10090] [88550] (55)
    SQ P01811 # HV41_MOUSE (P01811) Ig heavy chain V region UPC10
    1. 1mqk
      part of Fv against Paracoccus denitrificans cytochrome c oxidase
      1. chain h [85053]
    2. 1i8k
      part of dsFv MR1; complex with a EGFR-VIII peptide
      mutant
      1. chain b [71131]
    3. 2hff
      automatically matched to d1mf2h1
      1. region b:1-113 [136379]
    4. 2hff
      automatically matched to d1mf2h1
      1. region h:1-113 [136381]
    5. 1qkz
      part of Fab MN14C11.6
      1. region h:1-113 [20137]
    6. 1dsf
      part of anticancer Fv B1; disulfide-stabilized
      mutant
      1. chain h [20247]
    7. 1h0d
      part of anti-angiogenin FAB; conflict: annotated in PDB as human
      complexed with gol, pca, so4
      1. region b:1-113 [83427]
    8. 1hil
      part of Fab 17/9
      1. region b:1-112 [19787]
      2. region d:1-112 [19789]
    9. 1cfv
      part of Fv 4155
      complexed with e3g, zn
      1. chain h [20161]
    10. 1bfv
      part of Fv 4155
      complexed with stg, zn
      1. chain h [20163]
    11. 1bm3
      part of anti-integrin Fab OPG2
      1. region h:1-125 [20067]
    12. 2fbj
      part of Fab J539
      complexed with fuc, nag, zn
      1. region h:1-118 [19851]
    13. 2hrp
      part of Fab F11.2.32 against HIV-1 protease
      1. region h:1-113 [20171]
      2. region n:1-113 [20173]
    14. 1i8i
      part of dsFv MR1; complex with a EGFR-VIII peptide
      mutant
      1. chain b [71129]
    15. 1opg
      part of anti-integrin Fab OPG2
      1. region h:1-125 [20069]
    16. 1f4x
      part of anti-carbohydrate Fab S-20-4
      complexed with mgs
      1. region h:1-117 [20451]
    17. 1ejo
      part of anti-FMDV Fab 4C4
      1. region h:2501-2619 [20429]
    18. 2bfv
      part of Fv 4155
      complexed with stg
      1. chain h [20165]
    19. 1f4w
      part of anti-carbohydrate Fab S-20-4
      1. region h:1-117 [20453]
    20. 3ehb
      automatically matched to d1mqkh_
      complexed with ca, cu, hea, lda, lmt, mg, per; mutant
      1. region c:1-119 [158152]
    21. 1ikf
      part of an anti-cyclosporin A Fab
      complexed with aba
      1. region h:1-126 [20033]
    22. 1ucb
      part of humanized Fab CBR96
      complexed with so4
      1. region h:1-113 [20101]
    23. 2j4w
      mutant
      1. region h:1-112 [145646]
    24. 2hfg
      automatically matched to d1mf2h1
      mutant
      1. region h:1-113 [136383]
    25. 1ind
      part of Fab Cha255
      complexed with eot, in
      1. region h:1-114 [19839]
    26. 2h1p
      part of polysaccharide binding antibody 2H1
      1. region h:301-420 [20191]
    27. 1mf2
      part of Fab F11.2.32 against HIV-1 protease
      1. region h:1-113 [20175]
      2. region n:1-113 [20177]
    28. 1bz7
      part of humanized Fab R24 from murine ascites
      1. region b:1-122 [20403]
    29. 1ar1
      part of Fv against Paracoccus denitrificans cytochrome c oxidase
      complexed with ca, cu, hea, lda, mg
      1. chain c [20207]
    30. 1bln
      part of anti-P-glycoprotein Fab MRK-16
      1. region b:1-113 [20331]
      2. region d:1-113 [20333]
    31. 1frg
      part of Fab 26/9
      complexed with nh2
      1. region h:218-336 [19925]
    32. 1cly
      part of humanized Fab CBR96
      complexed with fuc, gal, nag, non
      1. region h:1-113 [20103]
    33. 1clz
      part of Fab MBR96
      complexed with fuc, gal, nag, non
      1. region h:1-113 [20105]
    34. 1fh5
      part of Fab MAK33; conflict: annotated in PDB as human protein
      1. region h:4-120 [20465]
    35. 1ots
      part of anti-CLC chloride channel Fab
      complexed with cl
      1. region c:2-121 [87417]
      2. region e:2-121 [87421]
    36. 1ifh
      part of Fab 17/9
      1. region h:1-112 [19791]
    37. 1igc
      part of Fab MoPC21
      1. region h:1-119 [20047]
    38. 1ine
      part of Fab Cha255
      complexed with eot, fe
      1. region h:1-114 [19841]
    39. 1igf
      part of Fab B13I2
      complexed with nag
      1. region h:1-113 [19813]
      2. region j:1-113 [19815]
    40. 1igt
      part of intact IgG2a antibody Mab231
      complexed with fuc, gal, man, nag
      1. region b:1-114 [19765]
      2. region d:1-114 [19767]
    41. 1h3p
      part of anti-hepatitis B Fab (against PRES1 region)
      1. region h:1-113 [76648]
    42. 1him
      part of Fab 17/9; chain identifiers are mixed up
      complexed with nh2
      1. region l:1-112 [19792]
      2. region m:1-112 [19794]
    43. 2igf
      part of Fab B13I2
      complexed with nag
      1. region h:1-113 [19817]
    44. 1qle
      part of Fv against Paracoccus denitrificans cytochrome c oxidase
      1. chain h [20209]
    45. 1f4y
      part of anti-carbohydrate Fab S-20-4
      complexed with mgu
      1. region h:1-117 [20455]
    46. 1hin
      part of Fab 17/9
      1. region h:1-112 [19797]
    47. 1kno
      part of Fab CNJ206
      complexed with pnp, zn
      1. region b:1-119 [20009]
      2. region d:1-119 [20011]
      3. region f:1-119 [20013]
    48. 2j5l
      automatically matched to 2J4W H:1-112
      mutant
      1. region c:1-112 [145663]
    49. 1ott
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
      1. region c:2-121 [87427]
      2. region e:2-121 [87431]
    50. 1qfw
      part of anti-[gonadotropin beta subunit] Fv
      complexed with nag
      1. chain i [20437]
    51. 1otu
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
      1. region c:2-121 [87437]
      2. region e:2-121 [87441]
    52. 1r24
      part of humanized Fab R24 from murine ascites
      1. region b:1-122 [20405]
      2. region d:1-122 [20407]
    53. 1uz8
      MQ P01811 P22436 # ! natural chimera
      complexed with fuc, gal, mag
      1. region b:1-113 [108168]
      2. region h:1-113 [108170]
    54. 1uz6
      MQ P01811 P22436 # ! natural chimera
      complexed with so4
      1. region f:1-113 [108152]
      2. region h:1-113 [108154]
      3. region p:1-113 [108160]
      4. region w:1-113 [108164]
    55. 2gfb
      part of Fab CNJ206; H-chains in this entry seem to be mistraced in VH region
      1. region b:1-119 [19993]
      2. region d:1-119 [19995]
      3. region f:1-119 [19997]
      4. region h:1-119 [19999]
      5. region j:1-119 [20001]
      6. region l:1-119 [20003]
      7. region n:1-119 [20005]
      8. region p:1-119 [20007]
  9. Mouse (Mus musculus), cluster 3.1 [TaxId: 10090] [88551] (34)
    SQ NA # natural chimera; best hits are: SQ P01751 (Ig heavy chain V region B1-8/186-2) and SQ P01864 (Ig gamma-2A chain C region secreted form)
    1. 1wej
      part of anti-cytochrome c Fab E8
      complexed with ace, hem, zn
      1. region h:1-112 [20361]
    2. 1a3r
      part of Fab 8F5
      complexed with nh2
      1. region h:2-119 [19781]
    3. 1cr9
      part of anti-prion Fab 3F4
      1. region h:1-110 [20431]
    4. 12e8
      part of Fab 2E8 specific to the low density lipoprotein receptor binding region of apolipoprotein E
      1. region h:1-114 [20269]
      2. region p:1-114 [20271]
    5. 1dvf
      part of Fv E5.2, anti-idiotopic antibody to D1.3
      CASP1
      complexed with zn
      1. chain d [20107]
    6. 1gaf
      part of humanized Fab 48G7
      complexed with npe
      1. region h:1-114 [20083]
    7. 35c8
      part of catalytic Fab 5C8
      complexed with nox
      1. region h:1-113 [20297]
    8. 1il1
      part of anti-HIV Fab G3-519
      1. region a:3-121 [62539]
    9. 1aj7
      part of humanized Fab 48G7
      complexed with npe
      1. region h:1-114 [20085]
    10. 2rcs
      part of humanized Fab 48G7
      1. region h:1-114 [20087]
    11. 1dzb
      part of anti-lysozyme scFv 1F9
      1. region a:1-117 [20488]
      2. region b:1-117 [20490]
    12. 1qok
      part of anti-carcinoembryonic scFv MFE-23
      1. region a:27-147 [20492]
    13. 25c8
      part of catalytic Fab 5C8
      complexed with gep
      1. region h:1-113 [20299]
    14. 1qbl
      part of anti-cytochrome c Fab E8
      1. region h:1-112 [20363]
    15. 1k6q
      part of anti-human tissue factor Fab D3
      1. region h:1-117 [72092]
    16. 1qbm
      part of anti-cytochrome c Fab E8
      1. region h:1-112 [20365]
    17. 1hkl
      part of humanized Fab 48G7
      1. region h:1-114 [20089]
    18. 2ap2
      part of P-glycoprotein-specific scFv C219
      1. chain b [20179]
      2. chain d [20181]
    19. 1moe
      part of anti-CEA scFv T84.66; VL to VH linkage: linker residues 112-119; assembles as a diabody
      complexed with so4
      1. region a:120-240 [85031]
      2. region b:120-240 [85033]
    20. 2bdn
      1. region h:1-117 [144985]
    21. 1fgn
      part of anti-human tissue factor Fab 5G9
      1. region h:1-117 [20217]
    22. 1cu4
      part of anti-prion Fab 3F4
      1. region h:3-110 [20433]
    23. 15c8
      part of catalytic Fab 5C8
      1. region h:1-113 [20301]
    24. 1ap2
      part of P-glycoprotein-specific scFv C219
      1. chain b [20183]
      2. chain d [20185]
    25. 2gsi
      complexed with na
      1. region b:2-114 [145221]
    26. 2gsi
      automatically matched to 2GSI B:2-114
      complexed with na
      1. region d:2-114 [145223]
    27. 2gsi
      automatically matched to 2GSI B:2-114
      complexed with na
      1. region f:2-114 [145225]
    28. 2gsi
      automatically matched to 2GSI B:2-114
      complexed with na
      1. region h:2-114 [145227]
    29. 1bbd
      part of Fab 8F5
      complexed with so4
      1. region h:1-119 [19783]
    30. 1jnl
      part of anti-estradiol Fab 17E12E5
      1. region h:1-114 [66956]
    31. 1jnn
      part of anti-estradiol Fab 17E12E5
      complexed with est
      1. region h:1-114 [66960]
    32. 1a5f
      part of an anti-E-selectin Fab
      1. region h:1-120 [20303]
    33. 1ahw
      part of anti-human tissue factor Fab 5G9
      1. region b:1-117 [20219]
      2. region e:1-117 [20221]
    34. 2hh0
      mutant
      1. region h:1-149 [136462]
  10. Mouse (Mus musculus), cluster 3.2 [TaxId: 10090] [88552] (156)
    SQ P01756 1-117 # 78% sequense identity; HV12_MOUSE Ig heavy chain V region MOPC 104E ! SQ NA # humanized antibody ! SQ P01750 # HV06_MOUSE Ig heavy chain V region 102 precursor ! SQ P01750 20-116 # ! HV06_MOUSE Ig heavy chain V region 102 precursor
    1. 1mju
      part of the esterolytic Fab ms6-164
      complexed with gol
      1. region h:1-113 [91302]
    2. 1mex
      part of Fab 29g12
      complexed with rac
      1. region h:1-113 [91257]
    3. 1j05
      part of anti-CEA Fv T84.66
      complexed with gol, po4
      1. chain b [90736]
      2. chain h [90737]
    4. 1rur
      part of Diels-Alder catalytic Fab 13G5
      complexed with zn
      1. region h:1-113 [97879]
    5. 1c5c
      part of humanized catalytic Fab 21D8 with a decarboxylase activity
      complexed with gol, tk4
      1. region h:1-113 [20475]
    6. 1mj8
      part of the esterolytic Fab ms6-164
      complexed with gol, po4
      1. region h:2-113 [91290]
    7. 1mfa
      part of Fv SE155-4
      complexed with abe, gal, mma
      1. region h:251-367 [19889]
    8. 1um5
      complexed with ss1
      1. region h:3-119 [113302]
    9. 1q0x
      part of anti-morfine Fab 9b1
      complexed with pg4, so4
      1. region h:1-113 [95517]
    10. 1mvu
      part of P-glycoprotein-specific scFv C219; complexed with synthetic epitope peptide, chain P
      complexed with so4; mutant
      1. chain b [91475]
    11. 1p7k
      part of anti-ssDNA Fab
      complexed with 1pe, epe, gol, peg, so4
      1. region h:1-113 [94291]
      2. region b:1-113 [94289]
    12. 1a6w
      part of Fv B1-8; this domain is identical to the N-terminal domain of scFv 1NQB
      complexed with nip
      1. chain h [20253]
    13. 1f3d
      part of catalytic Fab 4B2
      complexed with so4, tpm
      1. region h:1-121 [20462]
      2. region k:1-121 [20463]
    14. 1n7m
      part of metal chelatase catalytic Fab 7G12; germline antibody; chain identifiers are probably mixed up
      complexed with mmp
      1. region l:1-114 [80254]
    15. 1um4
      complexed with sh4
      1. region h:3-119 [113298]
    16. 1e6o
      part of Fab 13B5 against HIV-1 capsid protein p24
      1. region h:1-120 [20495]
    17. 1r3j
      part of Fab against potassium channel KcsA
      complexed with dga, f09, tl; mutant
      1. region b:1-118 [96930]
    18. 1xiw
      1. chain d [115370]
      2. chain h [115374]
    19. 1ruq
      part of Diels-Alder catalytic Fab 13G5
      complexed with zn
      1. region h:1-113 [97875]
    20. 1nqb
      part of scFv trivalent antibody; N-terminal, VH domain is from B1-8 antibody (1A6U CH H); C-terminal, VL domain is from NQ11 antibody
      1. region a:2-120 [20042]
      2. region c:2-120 [20044]
    21. 2fat
      automatically matched to 2FD6 H:1-113
      1. region h:1-113 [147015]
    22. 1q0y
      part of anti-morfine Fab 9b1
      complexed with moi, so4
      1. region h:1-113 [95521]
    23. 1k4c
      part of Fab against potassium channel KcsA
      complexed with dga, f09, k; mutant
      1. region a:1-118 [68126]
    24. 1mjj
      part of the esterolytic Fab ms6-164
      complexed with hal, so4
      1. region b:1-113 [91296]
      2. region h:1-113 [91298]
    25. 1a3l
      part of Diels-Alder catalytic Fab 13G5
      complexed with cfc
      1. region h:1-113 [20241]
    26. 1um6
      1. region h:3-119 [113306]
    27. 1h8n
      part of anti-ampicillin scFv
      complexed with gol, so4; mutant
      1. region a:132-243 [60784]
    28. 1yej
      part of Fab D2.3
      complexed with pnp, zn
      1. region h:1-113 [20141]
    29. 1p2c
      part of anti-lysozyme Fab F10.6.6
      1. region b:301-413 [93917]
      2. region e:1201-1313 [93922]
    30. 1c5b
      part of humanized catalytic Fab 21D8 with a decarboxylase activity
      1. region h:1-113 [20477]
    31. 1yei
      part of Fab D2.3
      complexed with pnp, zn
      1. region h:1-113 [20143]
    32. 1mfb
      part of Fab SE155-4
      complexed with abe, gal, man, ram
      1. region h:251-367 [19891]
    33. 1jfq
      part of Fab 36-71
      1. region h:302-421 [66646]
    34. 1mfc
      part of Fab SE155-4
      complexed with abe, gal, man, ram
      1. region h:251-367 [19895]
    35. 1yec
      part of Fab D2.3
      complexed with pnb, zn
      1. region h:1-113 [20145]
    36. 1kn4
      part of Fab D2.3
      complexed with pde, zn
      1. region h:1-113 [72765]
    37. 1e4w
      part of anti-TGFalpha Fab TAB2
      complexed with cl, ni
      1. region h:1-110 [59232]
    38. 2fd6
      complexed with edo, etx, fuc, nag, pg4, pge, so4
      1. region h:1-113 [145155]
    39. 1a6u
      part of Fv B1-8; this domain is identical to the N-terminal domain of scFv 1NQB
      1. chain h [20255]
    40. 1mfe
      part of Fab SE155-4
      complexed with abe, gal, man
      1. region h:251-367 [19893]