Structural Classification of Proteins
home mail help root up expand collapse

Changes in domain definitions and classification
Release 1.69 ---> 1.71

Root: scop

Classes:

  1. All alpha proteins [46456] (4)
    1. Long alpha-hairpin [46556] (1) picpic
    2. DNA/RNA-binding 3-helical bundle [46688] (1) picpic
    3. Hypothetical protein Aq 328 [101316] (1) picpic
    4. Porin chaperone SurA, peptide-binding domain [81826] (1) picpic
  2. All beta proteins [48724] (6)
    1. Immunoglobulin-like beta-sandwich [48725] (1) picpic
    2. Virus attachment protein globular domain [49834] (1) picpic
    3. OB-fold [50198] (1) picpic
    4. Elongation factor/aminomethyltransferase common domain [50464] (1) picpic
    5. Double psi beta-barrel [50684] (1) picpic
    6. Triple beta-spiral [51224] (1) picpic
  3. Alpha and beta proteins (a/b) [51349] (9)
    Mainly parallel beta sheets (beta-alpha-beta units)
    1. NAD(P)-binding Rossmann-fold domains [51734] (1) picpic
    2. Hypothetical protein PA1492 [110459] (1) picpic
    3. Ribonuclease H-like motif [53066] (1) picpic
    4. Hypothetical protein TM1506 [110649] (1) picpic
    5. S-adenosyl-L-methionine-dependent methyltransferases [53334] (1) picpic
    6. Dihydrofolate reductases [53596] (1) picpic
    7. Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1) picpic
    8. ATC-like [53670] (1) picpic
    9. Cytidine deaminase-like [53926] (1) picpic
  4. Alpha and beta proteins (a+b) [53931] (9)
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
    1. Cdc48 domain 2-like [54584] (1) picpic
    2. alpha/beta-Hammerhead [54664] (1) picpic
    3. Aminomethyltransferase folate-binding domain [103024] (1) picpic
    4. T-fold [55619] (1) picpic
    5. Nudix [55810] (1) picpic
    6. Thymidylate synthase/dCMP hydroxymethylase [55830] (1) picpic
    7. B3/B4 domain of PheRS, PheT [56036] (1) picpic
    8. C-type lectin-like [56435] (1) picpic
    9. Putative cell cycle protein MesJ, middle and C-terminal domain [82828] (1) picpic
  5. Multi-domain proteins (alpha and beta) [56572] (1)
    Folds consisting of two or more domains belonging to different classes
    1. ADP ribosyl cyclase-like [56628] (1) picpic
  6. Membrane and cell surface proteins and peptides [56835] (0)
    Does not include proteins in the immune system
  7. Small proteins [56992] (0)
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  8. Coiled coil proteins [57942] (1)
    Not a true class
    1. Antiparallel coiled-coil [58086] (2) picpic
  9. Low resolution protein structures [58117] (0)
    Not a true class
  10. Peptides [58231] (0)
    Peptides and fragments. Not a true class
  11. Designed proteins [58788] (0)
    Experimental structures of proteins with essentially non-natural sequences. Not a true class
Enter search key:
MRC site Generated from scop database 1.69_1.71 history with scopm 1.101 on Fri Oct 20 14:13:34 2006
Copyright © 1994-2005 The scop authors / scop@mrc-lmb.cam.ac.uk