Structural Classification of Proteins




Changes in domain definitions and classification
Release 1.59 ---> 1.61Root: scop
Classes:
- All alpha proteins [46456] (4)
- DNA/RNA-binding 3-helical bundle [46688] (1)

- FliG C-terminal domain [48028] (1)

- alpha-alpha superhelix [48370] (1)

- Phospholipase A2, PLA2 [48618] (1)

- All beta proteins [48724] (3)
- Concanavalin A-like lectins/glucanases [49898] (1)

- Supersandwich [49993] (3)

- SH3-like barrel [50036] (1)

- Alpha and beta proteins (a/b) [51349] (4)
Mainly parallel beta sheets (beta-alpha-beta units)
- MurE/MurF N-terminal domain [63417] (1)

- Flavodoxin-like [52171] (1)

- Glutaconate-CoA transferase subunits [53315] (1)

- Ribokinase-like [53612] (1)

- Alpha and beta proteins (a+b) [53931] (7)
Mainly antiparallel beta sheets (segregated alpha and beta regions)
- Lysozyme-like [53954] (1)

- RNase A-like [54075] (1)

- IL8-like [54116] (1)

- beta-Grasp (ubiquitin-like) [54235] (1)

- C-terminal domain of TolA [55215] (1)

- Dimeric C-terminal domain of membrane protein TonB [64324] (1)

- SH2-like [55549] (1)

- Multi-domain proteins (alpha and beta) [56572] (0)
Folds consisting of two or more domains belonging to different classes
- Membrane and cell surface proteins and peptides [56835] (0)
Does not include proteins in the immune system
- Small proteins [56992] (2)
Usually dominated by metal ligand, heme, and/or disulfide bridges
- Kringle-like [57439] (1)

- Rubredoxin-like [57769] (1)

- Coiled coil proteins [57942] (0)
Not a true class
- Low resolution protein structures [58117] (0)
Not a true class
- Peptides [58231] (0)
Peptides and fragments. Not a true class
- Designed proteins [58788] (0)
Experimental structures of proteins with essentially non-natural sequences. Not a true class
- Non-protein [0] (0)
PDB entries which are theoretical models, nucleic acids, or other non-proteins
Generated from scop database 1.59_1.61 history with scopm 1.100 on Fri Jan 23 17:51:43 2004
Copyright
© 1994-2003 The scop authors /
scop@mrc-lmb.cam.ac.uk