Structural Classification of Proteins
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Changes in domain definitions and classification
Release 1.59 ---> 1.61

Root: scop

Classes:

  1. All alpha proteins [46456] (4)
    1. DNA/RNA-binding 3-helical bundle [46688] (1) picpic
    2. FliG C-terminal domain [48028] (1) picpic
    3. alpha-alpha superhelix [48370] (1) picpic
    4. Phospholipase A2, PLA2 [48618] (1) picpic
  2. All beta proteins [48724] (3)
    1. Concanavalin A-like lectins/glucanases [49898] (1) picpic
    2. Supersandwich [49993] (3) picpic
    3. SH3-like barrel [50036] (1) picpic
  3. Alpha and beta proteins (a/b) [51349] (4)
    Mainly parallel beta sheets (beta-alpha-beta units)
    1. MurE/MurF N-terminal domain [63417] (1) picpic
    2. Flavodoxin-like [52171] (1) picpic
    3. Glutaconate-CoA transferase subunits [53315] (1) picpic
    4. Ribokinase-like [53612] (1) picpic
  4. Alpha and beta proteins (a+b) [53931] (7)
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
    1. Lysozyme-like [53954] (1) picpic
    2. RNase A-like [54075] (1) picpic
    3. IL8-like [54116] (1) picpic
    4. beta-Grasp (ubiquitin-like) [54235] (1) picpic
    5. C-terminal domain of TolA [55215] (1) picpic
    6. Dimeric C-terminal domain of membrane protein TonB [64324] (1) picpic
    7. SH2-like [55549] (1) picpic
  5. Multi-domain proteins (alpha and beta) [56572] (0)
    Folds consisting of two or more domains belonging to different classes
  6. Membrane and cell surface proteins and peptides [56835] (0)
    Does not include proteins in the immune system
  7. Small proteins [56992] (2)
    Usually dominated by metal ligand, heme, and/or disulfide bridges
    1. Kringle-like [57439] (1) picpic
    2. Rubredoxin-like [57769] (1) picpic
  8. Coiled coil proteins [57942] (0)
    Not a true class
  9. Low resolution protein structures [58117] (0)
    Not a true class
  10. Peptides [58231] (0)
    Peptides and fragments. Not a true class
  11. Designed proteins [58788] (0)
    Experimental structures of proteins with essentially non-natural sequences. Not a true class
  12. Non-protein [0] (0)
    PDB entries which are theoretical models, nucleic acids, or other non-proteins

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Generated from scop database 1.59_1.61 history with scopm 1.100 on Fri Jan 23 17:51:43 2004
Copyright © 1994-2003 The scop authors / scop@mrc-lmb.cam.ac.uk