Structural Classification of Proteins
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Changes in domain definitions and classification
Release 1.59 ---> 1.61

Root: scop

Classes:

  1. All alpha proteins [46456] (4)
    1. DNA/RNA-binding 3-helical bundle [46688] (1)
      1. ARID-like domain [46774] (1)
        1. MRF-2 DNA-binding domain [46778] (1)
          1. MRF-2 DNA-binding domain [46779]
            1. Human (Homo sapiens) [46780] (1) picpic
    2. FliG C-terminal domain [48028] (1)
      1. FliG C-terminal domain [48029] (1)
        1. FliG C-terminal domain [48030] (1)
          1. FliG C-terminal domain [48031]
            1. Thermotoga maritima [48032] (2) picpic
    3. alpha-alpha superhelix [48370] (1)
      1. Ankyrin repeat [48403] (1)
        1. Ankyrin repeat [48404] (12)
          1. 53BP2 [48405]
            1. Human (Homo sapiens) [48406] (1) picpic
          2. GA bindinig protein (GABP) beta 1 [48407]
            1. Mouse (Mus musculus) [48408] (1) picpic
          3. Cell cycle inhibitor p19ink4D [48409]
            1. Human (Homo sapiens) [48410] (3) picpic
            2. Mouse (Mus musculus) [48411] (1) picpic
          4. p18ink4C(ink6) [48412]
            1. Human (Homo sapiens) [48413] (5) picpic
          5. Cell cycle inhibitor p16ink4A [48414]
            1. Human (Homo sapiens) [48415] (4) picpic
            2. Mouse (Mus musculus) [48416] (1) picpic
          6. I-kappa-B-alpha [48417]
            1. Human (Homo sapiens) [48418] (3) picpic
          7. bcl-3 [69091]
            1. Human (Homo sapiens) [69092] (2) picpic
          8. Myotrophin [48419]
            1. Rat (Rattus norvegicus) [48420] (2) picpic
          9. Swi6 ankyrin-repeat fragment [48421]
            1. Baker's yeast (Saccharomyces cerevisiae) [48422] (2) picpic
          10. Pyk2-associated protein beta [48423]
            1. Mouse (Mus musculus) [48424] (1) picpic
    4. Phospholipase A2, PLA2 [48618] (1)
      1. Phospholipase A2, PLA2 [48619] (1)
        1. Vertebrate phospholipase A2 [48623] (4)
          1. beta2-bungarotoxin, phospholipase A2 chain [48641]
            1. Many-banded krait (Bungarus multicinctus), elapid [48642] (1) picpic
          2. Myotoxin II [48643]
            1. Terciopelo (Bothrops asper) [48644] (2) picpic
            2. Bothrops godmani [48645] (1) picpic
            3. Snake (Bothrops pirajai), piratoxin III [69123] (2) picpic
  2. All beta proteins [48724] (3)
    1. Concanavalin A-like lectins/glucanases [49898] (1)
      1. Concanavalin A-like lectins/glucanases [49899] (1)
        1. Calnexin/calreticulin [69236] (1)
          1. Calnexin [69237]
            1. Dog (Canis familiaris) [69238] (2) picpic
    2. Supersandwich [49993] (3)
      1. beta-Galactosidase, domain 5 [49994] (1)
        1. beta-Galactosidase, domain 5 [49995] (1)
          1. beta-Galactosidase, domain 5 [49996]
            1. Escherichia coli [49997] (124) picpic
      2. Hyaluronate lyase-like, central domain [50005] (1)
        1. Hyaluronate lyase-like, central domain [50006] (3)
          1. Chondroitinase AC [50007]
            1. Pedobacter heparinus (Flavobacterium heparinum) [50008] (5) picpic
          2. Hyaluronate lyase [50009]
            1. Streptococcus pneumoniae [50010] (3) picpic
            2. Streptococcus agalactiae [69241] (2) picpic
      3. Lactobacillus maltose phosphorylase, N-terminal domain [63732] (1)
        1. Lactobacillus maltose phosphorylase, N-terminal domain [63733] (1)
          1. Lactobacillus maltose phosphorylase, N-terminal domain [63734]
            1. Lactobacillus brevis [63735] (2) picpic
    3. SH3-like barrel [50036] (1)
      1. SH3-domain [50044] (1)
        1. SH3-domain [50045] (2)
          1. c-src tyrosine kinase [50064]
            1. Human (Homo sapiens) [50065] (4) picpic
            2. Mouse (Mus musculus) [69245] (1) picpic
  3. Alpha and beta proteins (a/b) [51349] (4)
    Mainly parallel beta sheets (beta-alpha-beta units)
    1. MurE/MurF N-terminal domain [63417] (1)
      1. MurE/MurF N-terminal domain [63418] (1)
        1. MurE/MurF N-terminal domain [63419] (2)
          1. UDP-N-acetylmuramyl tripeptide synthetase MurE [63951]
            1. Escherichia coli [63952] (2) picpic
          2. UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF [63420]
            1. Escherichia coli [63421] (2) picpic
    2. Flavodoxin-like [52171] (1)
      1. Ornithine decarboxylase N-terminal "wing" domain [52251] (1)
        1. Ornithine decarboxylase N-terminal "wing" domain [52252] (1)
          1. Ornithine decarboxylase N-terminal "wing" domain [52253]
            1. Lactobacillus sp., strain 30a [52254] (3) picpic
    3. Glutaconate-CoA transferase subunits [53315] (1)
      1. Glutaconate-CoA transferase subunits [53316] (1)
        1. Glutaconate-CoA transferase subunits [53317] (2)
          1. Glutaconate-CoA transferase alpha [53318]
            1. Acidaminococcus fermentans [53319] (2) picpic
          2. Glutaconate-CoA transferase beta [53320]
            1. Acidaminococcus fermentans [53321] (2) picpic
    4. Ribokinase-like [53612] (1)
      1. MurD-like peptide ligases, catalytic domain [53623] (1)
        1. MurD/MurE/MurF [53624] (2)
          1. UDP-N-acetylmuramyl tripeptide synthetase MurE [64150]
            1. Escherichia coli [64151] (2) picpic
          2. UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF [53627]
            1. Escherichia coli [53628] (2) picpic
  4. Alpha and beta proteins (a+b) [53931] (7)
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
    1. Lysozyme-like [53954] (1)
      1. Lysozyme-like [53955] (1)
        1. C-type lysozyme [53960] (1)
          1. Lysozyme [53961]
            1. Chicken (Gallus gallus) [53962] (2) picpic
    2. RNase A-like [54075] (1)
      1. RNase A-like [54076] (1)
        1. Ribonuclease A-like [54077] (1)
          1. P-30 protein [54082]
            1. Frog (Rana pipiens) [54083] (1) picpic
    3. IL8-like [54116] (1)
      1. Chromo domain-like [54160] (1)
        1. Chromo domain [54165] (1)
          1. HP1 homologue SWI6 [54168]
            1. Fission yeast (Schizosaccharomyces pombe) [54169] (2) picpic
    4. beta-Grasp (ubiquitin-like) [54235] (1)
      1. 2Fe-2S ferredoxin-like [54292] (1)
        1. 2Fe-2S ferredoxin-related [54293] (3)
          1. Ferredoxin VI [64229]
            1. Rhodobacter capsulatus [64230] (1) picpic
          2. Putidaredoxin [54306]
            1. Pseudomonas putida [54307] (3) picpic
          3. Terpredoxin [54308]
            1. Pseudomonas sp. [54309] (1) picpic
    5. C-terminal domain of TolA [55215] (1)
      1. C-terminal domain of TolA [55216] (1)
        1. C-terminal domain of TolA [55217] (1)
          1. C-terminal domain of TolA [55218]
            1. Escherichia coli [55219] (1) picpic
    6. Dimeric C-terminal domain of membrane protein TonB [64324] (1)
      1. Dimeric C-terminal domain of membrane protein TonB [64325] (1)
        1. Dimeric C-terminal domain of membrane protein TonB [64326] (1)
          1. Dimeric C-terminal domain of membrane protein TonB [64327]
            1. Escherichia coli [64328] (2) picpic
    7. SH2-like [55549] (1)
      1. SH2 domain [55550] (1)
        1. SH2 domain [55551] (1)
          1. v-src tyrosine kinase [55554]
            1. Rous sarcoma virus, Schmidt-ruppin strain a [55555] (12) picpic
  5. Multi-domain proteins (alpha and beta) [56572] (0)
    Folds consisting of two or more domains belonging to different classes
  6. Membrane and cell surface proteins and peptides [56835] (0)
    Does not include proteins in the immune system
  7. Small proteins [56992] (2)
    Usually dominated by metal ligand, heme, and/or disulfide bridges
    1. Kringle-like [57439] (1)
      1. Kringle-like [57440] (1)
        1. Kringle modules [57441] (1)
          1. Plasminogen kringle domains [57446]
            1. Human (Homo sapiens) [57447] (9) picpic
    2. Rubredoxin-like [57769] (1)
      1. Zn-binding RNA polymerase subunits [63393] (1)
        1. RBP9 subunit of RNA polymerase II [63394] (2)
          1. RBP9 subunit of RNA polymerase II [57787]
            1. Archaeon Thermococcus celer [57788] (1) picpic
            2. Baker's yeast (Saccharomyces cerevisiae) [64575] (8) picpic
  8. Coiled coil proteins [57942] (0)
    Not a true class
  9. Low resolution protein structures [58117] (0)
    Not a true class
  10. Peptides [58231] (0)
    Peptides and fragments. Not a true class
  11. Designed proteins [58788] (0)
    Experimental structures of proteins with essentially non-natural sequences. Not a true class
  12. Non-protein [0] (0)
    PDB entries which are theoretical models, nucleic acids, or other non-proteins
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Generated from scop database 1.59_1.61 history with scopm 1.100 on Fri Jan 23 17:51:43 2004
Copyright © 1994-2003 The scop authors / scop@mrc-lmb.cam.ac.uk