Structural Classification of Proteins




Changes in domain definitions and classification
Release 1.55 ---> 1.57Root: scop
Classes:
- All alpha proteins [46456] (4)
- Globin-like [46457] (1)

- DNA/RNA-binding 3-helical bundle [46688] (1)

- Thermolysin-like metalloproteases, C-terminal domain [47900] (1)

- Pleiotropic regulator of virulence genes, SarA [48289] (1)

- All beta proteins [48724] (8)
- Immunoglobulin-like beta-sandwich [48725] (1)

- Cupredoxins [49502] (1)

- PNGase F-like [49741] (2)

- Segmented RNA-genome viruses' proteins [49817] (1)

- OB-fold [50198] (1)

- Reductase/isomerase/elongation factor common domain [50412] (1)

- Single-stranded right-handed beta-helix [51125] (1)

- Double-stranded beta-helix [51181] (1)

- Alpha and beta proteins (a/b) [51349] (6)
Mainly parallel beta sheets (beta-alpha-beta units)
- Flavodoxin-like [52171] (1)

- P-loop containing nucleotide triphosphate hydrolases [52539] (1)

- (Phosphotyrosine protein) phosphatases II [52798] (1)

- alpha/beta-Hydrolases [53473] (1)

- Ribokinase-like [53612] (1)

- Thiolase-like [53900] (1)

- Alpha and beta proteins (a+b) [53931] (5)
Mainly antiparallel beta sheets (segregated alpha and beta regions)
- Elongation factor Ts (EF-Ts), dimerisation domain [54712] (1)

- Zincin-like [55485] (1)

- Mitochondrial processing peptidase, MPP [55993] (1)

- 4'-Phosphopantetheinyl transferase SFP [56213] (1)

- Fumarylacetoacetate hydrolase, FAH [56528] (1)

- Multi-domain proteins (alpha and beta) [56572] (0)
Folds consisting of two or more domains belonging to different classes
- Membrane and cell surface proteins and peptides [56835] (1)
Does not include proteins in the immune system
- Membrane all-alpha [56868] (1)

- Small proteins [56992] (4)
Usually dominated by metal ligand, heme, and/or disulfide bridges
- Defensin-like [57391] (1)

- Kringle-like [57439] (1)

- Cystine-knot cytokines [57500] (1)

- Rubredoxin-like [57769] (1)

- Coiled coil proteins [57942] (0)
Not a true class
- Low resolution protein structures [58117] (0)
Not a true class
- Peptides [58231] (0)
Peptides and fragments. Not a true class
- Designed proteins [58788] (0)
Experimental structures of proteins with essentially non-natural sequences. Not a true class
- Non-protein [0] (0)
PDB entries which are theoretical models, nucleic acids, or other non-proteins
Generated from scop database 1.55_1.57 history with scopm 1.100 on Mon Jan 26 19:10:26 2004
Copyright
© 1994-2003 The scop authors /
scop@mrc-lmb.cam.ac.uk