Structural Classification of Proteins
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Changes in domain definitions and classification
Release 1.55 ---> 1.57

Root: scop

Classes:

  1. All alpha proteins [46456] (4)
    1. Globin-like [46457] (1) picpic
    2. DNA/RNA-binding 3-helical bundle [46688] (1) picpic
    3. Thermolysin-like metalloproteases, C-terminal domain [47900] (1) picpic
    4. Pleiotropic regulator of virulence genes, SarA [48289] (1) picpic
  2. All beta proteins [48724] (8)
    1. Immunoglobulin-like beta-sandwich [48725] (1) picpic
    2. Cupredoxins [49502] (1) picpic
    3. PNGase F-like [49741] (2) picpic
    4. Segmented RNA-genome viruses' proteins [49817] (1) picpic
    5. OB-fold [50198] (1) picpic
    6. Reductase/isomerase/elongation factor common domain [50412] (1) picpic
    7. Single-stranded right-handed beta-helix [51125] (1) picpic
    8. Double-stranded beta-helix [51181] (1) picpic
  3. Alpha and beta proteins (a/b) [51349] (6)
    Mainly parallel beta sheets (beta-alpha-beta units)
    1. Flavodoxin-like [52171] (1) picpic
    2. P-loop containing nucleotide triphosphate hydrolases [52539] (1) picpic
    3. (Phosphotyrosine protein) phosphatases II [52798] (1) picpic
    4. alpha/beta-Hydrolases [53473] (1) picpic
    5. Ribokinase-like [53612] (1) picpic
    6. Thiolase-like [53900] (1) picpic
  4. Alpha and beta proteins (a+b) [53931] (5)
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
    1. Elongation factor Ts (EF-Ts), dimerisation domain [54712] (1) picpic
    2. Zincin-like [55485] (1) picpic
    3. Mitochondrial processing peptidase, MPP [55993] (1) picpic
    4. 4'-Phosphopantetheinyl transferase SFP [56213] (1) picpic
    5. Fumarylacetoacetate hydrolase, FAH [56528] (1) picpic
  5. Multi-domain proteins (alpha and beta) [56572] (0)
    Folds consisting of two or more domains belonging to different classes
  6. Membrane and cell surface proteins and peptides [56835] (1)
    Does not include proteins in the immune system
    1. Membrane all-alpha [56868] (1) picpic
  7. Small proteins [56992] (4)
    Usually dominated by metal ligand, heme, and/or disulfide bridges
    1. Defensin-like [57391] (1) picpic
    2. Kringle-like [57439] (1) picpic
    3. Cystine-knot cytokines [57500] (1) picpic
    4. Rubredoxin-like [57769] (1) picpic
  8. Coiled coil proteins [57942] (0)
    Not a true class
  9. Low resolution protein structures [58117] (0)
    Not a true class
  10. Peptides [58231] (0)
    Peptides and fragments. Not a true class
  11. Designed proteins [58788] (0)
    Experimental structures of proteins with essentially non-natural sequences. Not a true class
  12. Non-protein [0] (0)
    PDB entries which are theoretical models, nucleic acids, or other non-proteins

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Generated from scop database 1.55_1.57 history with scopm 1.100 on Mon Jan 26 19:10:26 2004
Copyright © 1994-2003 The scop authors / scop@mrc-lmb.cam.ac.uk