Structural Classification of Proteins




Fold: NAD(P)-binding Rossmann-fold domains
- core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar
Lineage:
- Root: scop
- Class: Alpha and beta proteins (a/b)
Mainly parallel beta sheets (beta-alpha-beta units)
- Fold: NAD(P)-binding Rossmann-fold domains
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar
Superfamilies:
- NAD(P)-binding Rossmann-fold domains (8)
- Alcohol/glucose dehydrogenases, C-terminal domain (9)


N-terminal all-beta domain defines family
- Tyrosine-dependent oxidoreductases (27)

also known as short-chain dehydrogenases and SDR family
parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7
- Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain (20)


family members also share a common alpha+beta fold in C-terminal domain
- Formate/glycerate dehydrogenases, NAD-domain (9)

this domain interrupts the other domain which defines family
- Lactate & malate dehydrogenases, N-terminal domain (16)


- 6-phosphogluconate dehydrogenase-like, N-terminal domain (8)

the beta-sheet is extended to 8 strands, order 32145678; strands 7 & 8 are antiparallel to the rest
C-terminal domains also show some similarity
- Amino-acid dehydrogenase-like, C-terminal domain (11)

- Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain (2)

Generated from scop database 1.55 with scopm 1.095 on Mon Jul 9 18:35:50 2001
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© 1994-2001 The scop authors /
scop@mrc-lmb.cam.ac.uk