Structural Classification of Proteins
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Fold: NAD(P)-binding Rossmann-fold domains

core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b)
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamilies:

  1. NAD(P)-binding Rossmann-fold domains (8)
    1. Alcohol/glucose dehydrogenases, C-terminal domain (9) pic
      N-terminal all-beta domain defines family
    2. Tyrosine-dependent oxidoreductases (27)
      also known as short-chain dehydrogenases and SDR family
      parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7
    3. Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain (20) pic
      family members also share a common alpha+beta fold in C-terminal domain
    4. Formate/glycerate dehydrogenases, NAD-domain (9)
      this domain interrupts the other domain which defines family
    5. Lactate & malate dehydrogenases, N-terminal domain (16) pic
    6. 6-phosphogluconate dehydrogenase-like, N-terminal domain (8)
      the beta-sheet is extended to 8 strands, order 32145678; strands 7 & 8 are antiparallel to the rest
      C-terminal domains also show some similarity
    7. Amino-acid dehydrogenase-like, C-terminal domain (11)
    8. Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain (2)

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Generated from scop database 1.55 with scopm 1.095 on Mon Jul 9 18:35:50 2001
Copyright © 1994-2001 The scop authors / scop@mrc-lmb.cam.ac.uk