Structural Classification of Proteins
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Class: Peptides

Peptides and fragments

Lineage:

  1. Root: scop
  2. Class: Peptides
    Peptides and fragments

Folds:

  1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids (1)
    1. Membrane ion channel-forming peptide antibiotics containing D-aminoacids (3) pic
  2. Lantibiotic peptides (1)
    peptide antibiotic
    1. Lantibiotic peptides (2)
  3. Antimicrobial beta-hairpin (1)
    contains beta-hairpin crosslinked by disulphide bridge(s)
    1. Antimicrobial beta-hairpin (5)
  4. Antimicrobial helix (1)
    antibiotic peptide
    1. Antimicrobial helix (2)
  5. Microcin J25 (1)
    mycrocyclic antimicrobial peptide; bacteriocin
    1. Microcin J25 (1)
  6. Peptide hormones (1)
    contains one alpha-helix
    1. Peptide hormones (1)
      this is not a true superfamily
  7. delta-Toxin (1)
    1. delta-Toxin (1)
  8. PSP1-like (1)
    1. PSP1-like (1)
  9. Arg-rich RNA binding peptides (6)
    1. 30S ribosomal protein THX (1)
    2. HIV-1 REV fragments (1)
    3. RSG-1.2 peptide (1)
    4. TAT peptides (1)
    5. Box B RNA-binding N peptide (1)
    6. HTLV-1 peptide (1)
  10. DNA-binding domains of HMG-I(Y) (1)
    1. DNA-binding domains of HMG-I(Y) (1)
  11. VPR protein fragments (1)
    1. VPR protein fragments (1)
  12. Inactivation gate of potassium and sodium channels (1)
    1. Inactivation gate of potassium and sodium channels (1)
  13. Coagulation factor VIII, membrane-binding peptide (1)
    1. Coagulation factor VIII, membrane-binding peptide (1)
  14. Phosphocholine cytidylyltransferase membrane-binding peptides (1)
    1. Phosphocholine cytidylyltransferase membrane-binding peptides (1)
  15. Parathyroid hormone fragments (residues between 1 and 39) (1)
    1. Parathyroid hormone fragments (residues between 1 and 39) (1)
  16. Corticotropin releasing factor (1)
    1. Corticotropin releasing factor (1)
  17. Liposaccharide-binding protein CAP18 (residues 106-137) (1)
    1. Liposaccharide-binding protein CAP18 (residues 106-137) (1)
  18. Polymorphic antigen SPAM-H1 (residues 90-127) (1)
    1. Polymorphic antigen SPAM-H1 (residues 90-127) (1)
  19. Mellitin (1)
    1. Mellitin (1)
  20. Tertiapin (1)
    small disulphide-rich peptide
    1. Tertiapin (1)
  21. Antifreeze polypeptide HPLC-6 (1)
    1. Antifreeze polypeptide HPLC-6 (1)
  22. Troponin I fragments (1)
    1. Troponin I fragments (1)
  23. Pilin fragments (1)
    1. Pilin fragments (1)
  24. RP71935 (1)
    1. RP71935 (1)
  25. Atrial natriuretic peptide (1)
    1. Atrial natriuretic peptide (1)
  26. Compstatin (1)
    1. Compstatin (1)
  27. Membrane-bound antimicrobial peptides (1)
    1. Membrane-bound antimicrobial peptides (1)
  28. Endothelin-like (1)
    small disulphide-rich
    1. Endothelin-like (1) pic
  29. Heat-stable enterotoxin (HSE) (1)
    1. Heat-stable enterotoxin (HSE) (1)
  30. Conotoxins (1)
    disulphide-rich fold
    1. Conotoxins (4)
      all apart omega class; it is not a true superfamily
  31. Conantokin (1)
    1. Conantokin (2)
      gamma-carboxyglutamic acid (GLA)-rich peptide; active conformation may be stabilized by metal ions
  32. Contryphan-R (1)
    1. Contryphan-R (1)
  33. Immunodominant region of protein G of BRSV (1)
    hairpin of two short helices crosslinked with two disulphides
    1. Immunodominant region of protein G of BRSV (1)
  34. Bradykinin antagonist B-9340 (1)
    1. Bradykinin antagonist B-9340 (1)
  35. Transmembrane helical fragments (1)
    1. Transmembrane helical fragments (1)
  36. Topogenic peptides (3)
    1. Ferredoxin chloroplastic transit peptide (1)
    2. Vacuolar targeting peptide from NA-PROPI (residues 29-54) (1)
    3. Microcin leader peptide (1)
  37. Phospholamban fragments (1)
    1. Phospholamban fragments (1)
  38. Fragment of bowman-birk inhibitor (1)
    1. Fragment of bowman-birk inhibitor (1)
  39. Fragments of apolipoproteins (1)
    1. Fragments of apolipoproteins (1)
  40. Transactivation protein TAT (1)
    1. Transactivation protein TAT (1)
  41. Proline pipe (1)
    1. Proline pipe (1)
  42. Amyloid peptides (1)
    1. Amyloid peptides (1)
  43. Gelsolin fragment (residues 150-169) (1)
    1. Gelsolin fragment (residues 150-169) (1) pic
  44. Acetylcholine receptor fragment (residues alpha 67-76) (1)
    1. Acetylcholine receptor fragment (residues alpha 67-76) (1)
  45. Thrombomodulin EGF domain fragment (residues 409-426) (1)
    1. Thrombomodulin EGF domain fragment (residues 409-426) (1)
  46. MoMLV p15 fragment (residues 409-426) (1)
    1. MoMLV p15 fragment (residues 409-426) (1)
  47. Capsid protein major homology region peptide analog (1)
    1. Capsid protein major homology region peptide analog (1)
  48. CD4 receptor peptide, res. 403-419 (1)
    1. CD4 receptor peptide, res. 403-419 (1)
  49. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv (1)
    1. Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv (1)
  50. GroES, fragment of mobile loop (1)
    1. GroES, fragment of mobile loop (1)
  51. cAMP and cGMP phosphodiesterase (PDE) fragments (1)
    1. cAMP and cGMP phosphodiesterase (PDE) fragments (1)
  52. HIV-1 Nef protein fragments (1)
    1. HIV-1 Nef protein fragments (1)
  53. HIV-1 envelope gp120 protein concensus V3 loop peptide (1)
    1. HIV-1 envelope gp120 protein concensus V3 loop peptide (1)
  54. Hepatitis C virus N-terminal capsid protein fragment 2-45 (1)
    1. Hepatitis C virus N-terminal capsid protein fragment 2-45 (1)
  55. P27(KIP1) fragment 22-106 (1)
    1. P27(KIP1) fragment 22-106 (1)
  56. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) (1)
    1. Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350) (1)
  57. alpha-lactalbumin peptide model (1)
    1. alpha-lactalbumin peptide model (1)
  58. Coat protein-binding domain of bacteriophage p22 scaffolding protein (1)
    1. Coat protein-binding domain of bacteriophage p22 scaffolding protein (1)
  59. Immunoreceptor tyrosine kinase activation motif, ITAM (1)
    1. Immunoreceptor tyrosine kinase activation motif, ITAM (1)
  60. Cytoplasmic domain of the integrin alpha-iib subunit (1)
    1. Cytoplasmic domain of the integrin alpha-iib subunit (1)
  61. Human glutathione reductase (HGR) inhibitor (1)
    1. Human glutathione reductase (HGR) inhibitor (1)
  62. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase (1)
    1. Small subunit C-terminal inhibitory peptide of ribonucleotide reductase (1)
  63. Histone H3 C-terminal fragment 130-135 (1)
    1. Histone H3 C-terminal fragment 130-135 (1)
  64. Smad-binding domain of Sara (1)
    1. Smad-binding domain of Sara (1)
  65. Peptide derived from p-21 activated kinase (1)
    1. Peptide derived from p-21 activated kinase (1)
  66. pak1 autoregulatory domain (1)
    1. pak1 autoregulatory domain (1)
  67. Translocated intimin receptor (tir) intimin-binding domain (1)
    1. Translocated intimin receptor (tir) intimin-binding domain (1)
  68. Fragment 671-690 of the rabbit skeletal dihydropyridine receptor (1)
    1. Fragment 671-690 of the rabbit skeletal dihydropyridine receptor (1)
  69. C-terminal negative regulatory domain of p53 (1)
    1. C-terminal negative regulatory domain of p53 (1)
  70. FxFG nucleoporin repeats (1)
    1. FxFG nucleoporin repeats (1)
  71. TCF3-CBD (catenin-binding domain) (1)
    1. TCF3-CBD (catenin-binding domain) (1)
  72. Synaptobrevin-II fragments (1)
    1. Synaptobrevin-II fragments (1)
  73. VMIP-II fragment (1)
    1. VMIP-II fragment (1)
  74. Papillomavirus e6-interacting peptide of e6ap (1)
    1. Papillomavirus e6-interacting peptide of e6ap (1)
  75. Isolated insulin B-chain (1)
    1. Isolated insulin B-chain (1)
  76. N-terminal hairpin of ubiquitin (residues 1-17) (1)
    1. N-terminal hairpin of ubiquitin (residues 1-17) (1)
  77. alpha-helical hairpin of p8mtcp1 (1)
    1. alpha-helical hairpin of p8mtcp1 (1)
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Generated from scop database 1.55 with scopm 1.095 on Mon Jul 9 18:35:50 2001
Copyright © 1994-2001 The scop authors / scop@mrc-lmb.cam.ac.uk